Sequence details bmy_04975 (Coding sequence)

Part of scaffold_171 (Scaffold)

For more information consult the page for scaffold_171 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRRC56 ENSTTRG00000011121 (Bottlenosed dolphin)

Gene Details

leucine rich repeat containing 56

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010546, Bottlenosed dolphin)

Protein Percentage 93.17%
cDNA percentage 96.27%
Ka/Ks Ratio 0.58808 (Ka = 0.0338, Ks = 0.0576)

LRRC56 ENSBTAG00000048263 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000054460, Cow)

Protein Percentage 79.73%
cDNA percentage 86.58%
Ka/Ks Ratio 0.26915 (Ka = 0.1048, Ks = 0.3894)

LRRC56  (Minke Whale)

Gene Details

leucine rich repeat containing 56

External Links

Gene match (Identifier: BACU019790, Minke Whale)

Protein Percentage 98.63%
cDNA percentage 98.81%
Ka/Ks Ratio 0.17209 (Ka = 0.006, Ks = 0.0351)

Additional orthologs identified in other species via the OPTIC pipeline.

LRRC56 (Human)   Lrrc56 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1176 bp    Location:303695..321132   Strand:+
Raw sequence 
>bmy_04975
ATGGACCAGGCCTGGGACAGAGCCCATGGGCCTTGGCCAAGCAGAGCCAGTGTCCGAGTGCGGGAGCTGAGCTGGCAGAGCCGGCACAACCCCCGCCCCCAGAGCAAGGCCCCGGGCAGCCGAGGGGGCAGCCGCAGCGAGCGGCTGGTGGAGGAGCACCTGTCACCTGCCCGACTGCAGGCCCTGGCCCAGGTGGATGACCTCCGACTGGTGAGCGTGCTGGAGCTGTGTGTCAACACCCACGAGAACAGCCTGGGGAACTTTGGGCTGCACCTGCCCAACCTCAGCCAGCTGAAGCTGAACGGCAGCTGCCTGGGCTCCCTGAGGGACCTGGGCACCTCCCTGGGCCGCCTGCAGGTGCTGTGGCTGGCTCGCTGCGGCCTGGCTGACCTGGATGGCATCGGCTCCTTCCCAGCCCTGAAGGAACTCTACCTTTCCTACAACGACGTCTCGGACCTGAGCCCGCTGTGCCTGCTTGAGCAGCTGGAGGTGCTGGACCTGGAGAGCAACTGCGTGGAGGACCCGGGGCAGCTGTGCTACCTGCAGCTGTGCCCGCGGCTGGCCTCGCTCACCCTGGAGGGCAACCCGCTATGCCTGCGGCCCGGCCCCGGCCCCGCCCACCAGGTCTGGGGGCAGCGGCTACAGGGCGATGCTGGCCTGACGGGCCCACCGGACGCAGGCCTGCCACCCCCACCGCAGGTGCCCCAGGGCTACAACTACCGGGCAGAGGTCAGGAAGCTCATCCCCCAGCTGCAGGTCTTGGATGAGTTGCCGGCCACACACACACGCCTGCCGACCTCCCGGAAGCTGGACCACGACTGGCTCATGGTGAAGGAGGCCATCAAGGAGGGCAGCGTCCTGGACAGCCTGCTCCCCGGGCTGGAGCCTTCCAGGACCTTGGGCTACAACCTGACCCCCTCTCCTCCCAAGTCCCTCATGCCATCTGACAGGGGCAGCAGCTCCTGGGGGTCCACAGATCTGCAGTTCCGGGGGCGTCGCCTCAGAGCCCTGGGTAGTCTGGGGCCTGGCCTGGGTCAGGGGCTGGCTGCAGTGACTGCTCTGAGAGCCCTAGAGGTGGCCTCAGGCCCCAGCCCTCGAGCCGAAGGCTGTCCAGGCCCAAAGCCAGCACCAGATCCAGCAGCCAGACCCCCAGCCTCTGGTGCATGCCGCACCTGA

Related Sequences

bmy_04975T0 Protein

Length: 392 aa      View alignments
>bmy_04975T0
MDQAWDRAHGPWPSRASVRVRELSWQSRHNPRPQSKAPGSRGGSRSERLVEEHLSPARLQALAQVDDLRLVSVLELCVNTHENSLGNFGLHLPNLSQLKLNGSCLGSLRDLGTSLGRLQVLWLARCGLADLDGIGSFPALKELYLSYNDVSDLSPLCLLEQLEVLDLESNCVEDPGQLCYLQLCPRLASLTLEGNPLCLRPGPGPAHQVWGQRLQGDAGLTGPPDAGLPPPPQVPQGYNYRAEVRKLIPQLQVLDELPATHTRLPTSRKLDHDWLMVKEAIKEGSVLDSLLPGLEPSRTLGYNLTPSPPKSLMPSDRGSSSWGSTDLQFRGRRLRALGSLGPGLGQGLAAVTALRALEVASGPSPRAEGCPGPKPAPDPAARPPASGACRT*