Part of scaffold_171 (Scaffold)

For more information consult the page for scaffold_171 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PHRF1 ENSTTRG00000011140 (Bottlenosed dolphin)

Gene Details

PHD and ring finger domains 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010567, Bottlenosed dolphin)

Protein Percentage 94.41%
cDNA percentage 95.23%
Ka/Ks Ratio 0.23023 (Ka = 0.0283, Ks = 0.1229)

PHRF1 ENSBTAG00000046359 (Cow)

Gene Details

uncharacterized protein LOC100126170

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000056140, Cow)

Protein Percentage 82.37%
cDNA percentage 84.49%
Ka/Ks Ratio 0.17075 (Ka = 0.0945, Ks = 0.5535)

PHRF1  (Minke Whale)

Gene Details

PHD and ring finger domains 1

External Links

Gene match (Identifier: BACU003634, Minke Whale)

Protein Percentage 96.18%
cDNA percentage 96.59%
Ka/Ks Ratio 0.21754 (Ka = 0.0192, Ks = 0.0884)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4482 bp    Location:340893..366703   Strand:+
>bmy_04978
ATGGATGACGACAGCCTGGACGAGCTTGTGGACCGAAGCCCGGGGCCCGATGGCCACCGGAGACTCCGTCCTGCCGCCCTGACCAGCGATGCTGAAAGCAGCGATGCCCACAGTGGGGGCTCTGAGGACGACACGCGCAGTGAGCACAGTGACGGCGAGGACGAGGAGGGTGACCTGGAAGACGGATCTGGTTCCGAGGATTCCGAAGAAGACGGCGATGACGTGGACACGTTAGCGGCAGCAGCGGCTACTCGGGGGGCACTGGAAGCCAGCGGTGCATTTAACTCTGACGATGATTCGGAGAGCTGCCCGATCTGTCTTAATGCTTTCAGGGACCAGGCTGTGGGGACACCGGAGAACTGTGCCCACTACTTCTGCCTCGATTGCATCGTGGAGTGGTCCAAGAATGCCAATTCCTGTCCAGTTGATCGAACTATATTCAAATGTATTTGTATTCGAGCTCAATTTGGCGGTAAAATCTTGAAGAAGATCCCAGTGGAGAGTGCCAGGCTTGGGGAGGACGAGGATGAAGACCCGACCTTCTGTGGGGTGTGCGGCAGGAGCGACCGGGAGGACCGTCTGCTGCTCTGCGACGGCTGCGACGCTGGGTACCACATGGAGTGTTTGGACCCCCCTCTCCAGGAGGTGCCAGTGGACGAGTGGTTCTGTCCGGAATGTGCTGCCCCCGGGGCCGTCCCTGCTGCTGACGCGGGTCCCGTGAGCGAGGAGGAGGTCTCCCTGCTCTTGGCCAACGTAGTGCCCACCACCAGCCGGCTTCGGCCACACGCGGGGAGGACCCGGGCCATTGCCAGGACACGGCAGAGCGAGAGGGTCCGAGCGACCGTGAACCGGAACCGGATCTCCACTGCCAGGAGGATCCAGCACGTCCCAAGGTACCTCATGTCTCCTCTGCTGGACGAGACCATCGAAGCCGTGGCCGCTGGGCTGAGCACAGCCGTGTACCAGCGCCCCGGGCCGCGAGCCCCTGCCCGTCGGAGGAGGAAAGCAGGAAGACGGAAGAAAGTGTCGGGAAGAAAGAAAACCCTGTCCAGATCGTCTGTGAAGAGCAGGAGCTCGGGGACGAGGTCCAGGAAACGCCAGGGTCGCGTGAAGAAGAGAAAAGGGAAGAAGATAAAGAATGAAGCCACAGCTCGTTCCCGCATCGCACGGACGCTGGGCCTCCGCAGGCCAGCCCATGGAGCCTGCATCCCCTCGGTGTACAAGCCTGCAGACCCCTCTCTGGGGCTGATGCGTGCAGACATCGGGGCAGCTTCTCTCTCCCTGTTTGGAGACCCCTATGAGCTGGACCCCTTCGACAGCAGTGAAGAGGCATCTGCGAGCCCTGCTTCCCCTCTGAGCGCCAAGAGGAGGATTCTGTCCCGGTCAGCCCTGCGGTCGCACCAGCCCGTGGCCAGGCCTGTCTCCGTGGGGCTCTCCAGGAGGAGCGCTCCCGCCATGGCGCCCCAGCCGGAAGTGGACGCGGACCCCGGCCCTGACCTGCTGGGGAGCATCCTGTCGGGCCAGAGCTTCCTGATGATGAATGGCGCCGACATCGTCATCCACCGCGATGGCTCCCTCAGCGCCAAGAGGGCAGCACCAGTTTCTTTTCAGCGAAACTCAGTTGGTCCGTCCAGAGGGGCAGAAGGCGCCGGCTCTGGGGCCTGCCTGCAGCCCAGAGGGACTCAGTCAGGAAGCGGGCCAGAGAACTTGGGGTCCAGCTGTCCAGGCAGGGCCGCCCCGGGCACACCCCCGGCCCCACCCACCCCCGCCCATGTCCCTGCACTCACGTTGGGGGCAGCTGTGAGACTGGACTCCTTGGTGACCCCTCAGTCAGGCCAGGCTCAGACCTTGTCCAGCGTGAGCAGACCCAGCTTAAAACAAAGTGACGGCCCCCGATTTAACGGCGACAGCAAGCACCCTCCGCCTCTTAGGTCTGCAGCATTGAAGACCTCAAATGGTAGCTCTAATTCACCTTCCGAGAGCACGGTGCTGGGACAGGCCCCAAGACCAGCTCCCAGGAGGACGGACATCTCCGAGCTCCCCAGGATACCAAAGATCAGGAGAGACGACAGGCGGGGGGGCGAGGTCCCCGCCGGCGGGCAGAGAGTCGAGATTCCCAGCTCCTGCATCAGCCGGCTGACGGGCAGGGAGGGCCCCGGGCAGCCTGGCTGTGGCACCAGGGCGGAGGGTGAGCCCAGCAGCAGGGGTGCTCAGGAGCCCAGCACGCGCTCGGGGGGCGGCCCCCAGCCCCCTGCCCCGCTGGGCCCCTCCCGGGGTAAGGGTGTCGGCTCCACCTTCGAGAGCTTCAGGATCAACATTCCTGGGAACACAGCCCATTCCGGCAGAGTCCTCAGCCCCGGCTTCTGYAACACGTTCCGGCCCGTGGACAGCAAGGTGCAGAGAAGAGAGAGCCCGGCGCCCCTCTTTTCCGTCAGGAAGACAAAGCAGCTCAAGAGCGAGATTTATGACCCCTTCAACCCCACGGGCTCTGACTCCAGCTCGGCCAGCAGCAGCCCCGAGCACCCAGGCTCTGGCCTCCTGCCCTCTGAGATCACGCGCACCATCTCCGTCGACAGCCCCAAGGCCCCAGCGCTGCCGCCCGTGCGCTGCGTCACCTCCTACACAGTGCAGACCGGCATGGGGAAGGAGCCCGAGCCCCCCCAGGGGCCCTGCGGCCTGCCCGAGCTCCAGGGCGAGGAGGAGCCCGCGGCACAGGCGCAGAGGCCGTCCCCGCTGGAGCCCTGGGGGGACGAGGACCCACCACCCCGGAGCTCCTTCTTTGGCTCAGAGGGGCGGACGGTGACTTGTGTGACTGCGGTGGAGCCGGATGCCCCACCCAGTCCGGATGCCCTGCCCGCGACCACCCACAGGGTCGTGGAGCTGCGGTCCCCCACCCGTTCCCGCTCCAGGTCCAGCTCCCGCGGCGGGAAGAAAGCCCAGAGGCCGAGGGCCGCCACCAGGGAGCACCGGAGGGCCCGCTCGGGGTCCCGCTCATCCCGCTCGGGGGACAGGAGCTCGCGGTCCGCGTCGCCACCGGCAGGTGAGGGCCAGGCCAAGAGGCACCAGCCCAAGGCCCGGGATCGGAGGTCTTCCAGCGACCGCTCCAGCAGCCGCGAGCGCACCAAGCGGAGGAAGGCCAAGGACAAGAGCAGGGAGAGGAGGAGGGGCTCCTGGGGCCGAGGCCGGCGGAGGTCCCGCTCCCGCTCCGGCAGCCCCGGCAGCTCCTCCCACGAGCATCGCGAGGGCAGGAGGAAGAAGAGGCAGAGATCGGGGTCCCGGTCTCGGGGGAGGGAGTGCTCGCCCCCCAGCAGCCTGGAGAGAGCCCGGAGGCCCAGGCACCCCCGGGAGAGGAGGGAGCGGCCCGACAGGGAGAGTGCCGTGCGGCTCCGAGACAGGCGAGGCTCCCGAGAGAGGAGGCGGCGTAGGTCCAGGTCACCCAGCCCTGAGCACAGGCCCCGGGAGCACCGGCGGCCTCGGTCCCGCGAGAAGCGCCCACGGCCCCGCCCCCGCTCCCCGGAGAGGAAGTTGGCCCCGAAAGACGCTTCTCCGGCACCCCTTCCCCAGGGGGAGCCCAGGCTGGACAGGGAGCCCCCGGCCAGGCCCCTGGCCTTGGCAGGAACAGATGCCTTGCTGGAGGGGCCCGAGGCCAACAAGCCACCCGCAGAGGTCCCCCCAGTCCTGGAGGTGCCAGCCGAGTACCCCCACGAGGATCTGGATTACGGTGACTCCGTGGAGGCTGGGCACCTCTTCGAGGACTTTTCAAGTGAAGCCATCTTCATGCAGCTTGATGACATGAGCTCCCCGCCTTCCCCGGAGAGCACGGACTCCTCCCCAGAGCGAGGCCTCCTGCCCAGGCCCACTGGGCCCCCGGCTGGCCAGCAGCACGACGCTGGCCTGGCCGTGGCCATCATCCGCAGGGAGGTGTCTAGGATCCACGGTGAAGATGTGGCACAGCCCCTGCCCAGGATGGAGTGCCCTCAAGAGAAGCACTCGCTCCAGCAGGATGCGGCCGAGGCAGCCACAGCTTCCTGCGCTCTGGGAGGCCAAGCCATGGGTGGGGGGCCAGCGGGGAAGGAGGAGGGCCCCTCTCAGAACCCCCTGCTGCGGGCTAAGGCGCTGGTGAAGAGAGTCACCTGGGACCTCCAGGAGGTGGAGAGCGGTGCCCCGGCTGAGGACAGAGGCCTGCATGCTTTTCTGGAATTTTCCAGCCAGGAAACAGCCTTCTGGCGTGGCCACAGAGCACCCACCCCCCTGTGTTGGCCCTCAGGGACGCCACTTCACAGGCCGCAGAAGCCCTGGGAAACCGAGGACGCGGGCCCCGTGGCTGCGTTCCAGCAGGCTCCCTTCTCTGAGCCCCCTCCCCCTGGTTATGTGCTTCCGGAGCCTGGCTTTCCTGATGCTGACCCTTCTCAGGTGGGCGCCTGGGCTGGAGGGATGTGGCCTTGGGCTCGGGCCACGAGAGCTGGGCCGGGTTGGGGCTGA

Related Sequences

bmy_04978T0 Protein

Length: 1494 aa      View alignments
>bmy_04978T0
MDDDSLDELVDRSPGPDGHRRLRPAALTSDAESSDAHSGGSEDDTRSEHSDGEDEEGDLEDGSGSEDSEEDGDDVDTLAAAAATRGALEASGAFNSDDDSESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTIFKCICIRAQFGGKILKKIPVESARLGEDEDEDPTFCGVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGAVPAADAGPVSEEEVSLLLANVVPTTSRLRPHAGRTRAIARTRQSERVRATVNRNRISTARRIQHVPRYLMSPLLDETIEAVAAGLSTAVYQRPGPRAPARRRRKAGRRKKVSGRKKTLSRSSVKSRSSGTRSRKRQGRVKKRKGKKIKNEATARSRIARTLGLRRPAHGACIPSVYKPADPSLGLMRADIGAASLSLFGDPYELDPFDSSEEASASPASPLSAKRRILSRSALRSHQPVARPVSVGLSRRSAPAMAPQPEVDADPGPDLLGSILSGQSFLMMNGADIVIHRDGSLSAKRAAPVSFQRNSVGPSRGAEGAGSGACLQPRGTQSGSGPENLGSSCPGRAAPGTPPAPPTPAHVPALTLGAAVRLDSLVTPQSGQAQTLSSVSRPSLKQSDGPRFNGDSKHPPPLRSAALKTSNGSSNSPSESTVLGQAPRPAPRRTDISELPRIPKIRRDDRRGGEVPAGGQRVEIPSSCISRLTGREGPGQPGCGTRAEGEPSSRGAQEPSTRSGGGPQPPAPLGPSRGKGVGSTFESFRINIPGNTAHSGRVLSPGFCNTFRPVDSKVQRRESPAPLFSVRKTKQLKSEIYDPFNPTGSDSSSASSSPEHPGSGLLPSEITRTISVDSPKAPALPPVRCVTSYTVQTGMGKEPEPPQGPCGLPELQGEEEPAAQAQRPSPLEPWGDEDPPPRSSFFGSEGRTVTCVTAVEPDAPPSPDALPATTHRVVELRSPTRSRSRSSSRGGKKAQRPRAATREHRRARSGSRSSRSGDRSSRSASPPAGEGQAKRHQPKARDRRSSSDRSSSRERTKRRKAKDKSRERRRGSWGRGRRRSRSRSGSPGSSSHEHREGRRKKRQRSGSRSRGRECSPPSSLERARRPRHPRERRERPDRESAVRLRDRRGSRERRRRRSRSPSPEHRPREHRRPRSREKRPRPRPRSPERKLAPKDASPAPLPQGEPRLDREPPARPLALAGTDALLEGPEANKPPAEVPPVLEVPAEYPHEDLDYGDSVEAGHLFEDFSSEAIFMQLDDMSSPPSPESTDSSPERGLLPRPTGPPAGQQHDAGLAVAIIRREVSRIHGEDVAQPLPRMECPQEKHSLQQDAAEAATASCALGGQAMGGGPAGKEEGPSQNPLLRAKALVKRVTWDLQEVESGAPAEDRGLHAFLEFSSQETAFWRGHRAPTPLCWPSGTPLHRPQKPWETEDAGPVAAFQQAPFSEPPPPGYVLPEPGFPDADPSQVGAWAGGMWPWARATRAGPGWG*