Part of scaffold_171 (Scaffold)

For more information consult the page for scaffold_171 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TSPAN4 ENSTTRG00000012498 (Bottlenosed dolphin)

Gene Details

tetraspanin 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011859, Bottlenosed dolphin)

Protein Percentage 92.44%
cDNA percentage 93.14%
Ka/Ks Ratio 0.08211 (Ka = 0.021, Ks = 0.2555)

TSPAN4 ENSBTAG00000019369 (Cow)

Gene Details

tetraspanin-4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025806, Cow)

Protein Percentage 94.96%
cDNA percentage 93.84%
Ka/Ks Ratio 0.03966 (Ka = 0.0216, Ks = 0.5438)

TSPAN4  (Minke Whale)

Gene Details

tetraspanin 4

External Links

Gene match (Identifier: BACU003621, Minke Whale)

Protein Percentage 87.14%
cDNA percentage 88.64%
Ka/Ks Ratio 0.18664 (Ka = 0.084, Ks = 0.4499)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1035 bp    Location:540395..554716   Strand:+
>bmy_04996
ATGCGCCGCTCGAGCACGGACGAGTCCACGTACCGGCGCAGCCCGTCGCCGCCGGGCAAGGAGCCGGGCTTCGCGCGCTGCGGCCCCTTCTTTGGCCTGCACGCCAACCCCGGCCCCAAGGCGGCCCAGGCGCGCTACACGTCGCCCAAGGGCAACAAGTACGTGGTCTTCTACTTGGACCTGTCCTTCATCTTCCTCCTAGAGCTGAAGCGCTGCAGCATGGCGCGCGGCTGCCTGCAGGGCGTCAAGTACCTCATGTTCGCCTTCAACCTCCTCTTCTGGCTGGGCGGCTGCGGCATCCTCGGCGTCGGCATCTGGCTGGCGGCCACGCAGGGGAACTTCGCCACCCTGTCCTCCTCCTTCCCGTCCCTGTCGGCCGCCAACCTGCTTATCGTCGCCGGCACCTTTGTGATGGCCATCGGCTTCGTGGGCTGCGTCGGGGCCATCAAGGAGCACAAATGCCTCCTGCTCACCTTCTTCGTGATGCTGCTGCTGGTGTTCCTGCTGGAGACCTCCCTCGCCATCCTCTTCTTCGCCTACACTGACAAGATCGACAGGTACGCACAGCGGGACCTGAAGAAGGGCCTGCACCTGTATGGCACCCCGGGCAACGTGGGCCTCACCAACGCCTGGAGCATCATCCAGACAGACGTGAGTCGGGGTGTGGCCGGGGCGTGTAGGCGGGGGGGCGTGGCCGGGGCGGGGATGTGTCCCCCTCCCGCGCACAGTCCCAGCCCGCCTCTCCCGCAGTTCCGCTGCTGCGGGGTCTCCAACTACACCGACTGGTTCGAGGTCTACAACGCCACGCGCGTGCCTGACTCCTGCTGCCTGGAGTTCAGCGAGAGCTGCGGGTTGCACGCGCCCGGCACCTGGTGGAAGGCGCCGTGTTACGAGACGGTGAAGGTGTGGCTCCAGGAGAACCTGCTGGCCGTGGGCGTCTTTGGGCTGTGCACAGCACTGGTTCAGATCTTGGGCCTGACCTTTGCCATGACGATGTATTGCCAGGTGGTGAAGGCTGACACCTACTGCGCGTAG

Related Sequences

bmy_04996T0 Protein

Length: 345 aa      View alignments
>bmy_04996T0
MRRSSTDESTYRRSPSPPGKEPGFARCGPFFGLHANPGPKAAQARYTSPKGNKYVVFYLDLSFIFLLELKRCSMARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNFATLSSSFPSLSAANLLIVAGTFVMAIGFVGCVGAIKEHKCLLLTFFVMLLLVFLLETSLAILFFAYTDKIDRYAQRDLKKGLHLYGTPGNVGLTNAWSIIQTDVSRGVAGACRRGGVAGAGMCPPPAHSPSPPLPQFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAVGVFGLCTALVQILGLTFAMTMYCQVVKADTYCA*