Sequence detailsbmy_05016 (Coding sequence)

Part of scaffold_171 (SequenceType object (1))

For more information consult the page for scaffold_171 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CTSDENSTTRG00000014862 (Bottlenosed dolphin)

Gene Details

cathepsin D

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014090, Bottlenosed dolphin)

Protein Percentage 97.16%
cDNA percentage 97.16%
Ka/Ks Ratio 0.07877 (Ka = 0.0123, Ks = 0.1558)

CATDENSBTAG00000007622 (Cow)

Gene Details

cathepsin D precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000010022, Cow)

Protein Percentage 87.14%
cDNA percentage 88.35%
Ka/Ks Ratio 0.07877 (Ka = 0.0634, Ks = 0.8043)

CTSD (Minke Whale)

Gene Details

cathepsin D

External Links

Gene match (Identifier: BACU003604, Minke Whale)

Protein Percentage 81.27%
cDNA percentage 85.06%
Ka/Ks Ratio 0.28612 (Ka = 0.128, Ks = 0.4472)

Additional orthologs identified in other species via the OPTIC pipeline.

CTSD (Human)   Ctsd (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1356 bp    Location:1266075..1255679   Strand:-
Raw sequence 
>bmy_05016
GTGACCAGCCGGGTGCAAACAAGCCGGTCAGCTGACCCGGCCCGACTGCGCCGTCATCCCGGCTATAAGCGCGCGACCTCCCGGGCTGTCCGCTGTGACCGGGTCGCCGCCGCCATGCAGACCCCCTGCCTGCTGCTGCTGCTGCTGCTCGCCCTCGGCCTGCTGGCCGCGCCCGCCGCCGCGCTCGTCAGGATTCCACTGCACAAGTTCACATCCATCCGCCGGACCATGTCGGAAATGGGGGGCCCCATGGAAGACCTGATCGCCAAGGGCCCCATTTCAAAATACTCCCAGGGGGTGCCCACTGCGACCCAGGGGCCCATTCCTGAGATTCTCAAGAACTACATGGATGCTCAGTACTACGGGGAGATCGGCATTGGGACGCCCCCGCAGTGCTTCACGGTGGTCTTTGACACCGGCTCCTCCAATCTGTGGGTCCCGTCTATCCACTGCAAACTGCTGGACATCGCCTGCTGGACCCACCACAAGTACAACAGCGGCAAGTCTAGCACGTACGTGAAGAACGGCACGTCCTTCGACATCCACTACGGCTCAGGCAGCCTCTCCGGGTACCTGAGCCAGGACACCGTGTCGGTGCCCTGTAAATCAGGGTTGTTGAGCCTGGGCAGCATCAAGGTGGAGAGGCAGACCTTCGGGGAGGCCACCAAGCAGCCGGGCATCACCTTCATCGCAGCCAAGTTCGATGGCATCCTGGGCATGGCCTACCCCCGCATCTCCGTGAACAACGTGGTCCCCGTCTTTGACAACCTGATGCAGCAGAAGCTGGTGGACAAGAACATCTTCTCCTTCTACCTGAACAGGGACCCAAATGCGCAGCCCGGGGGTGAGCTGATGCTGGGCGGCACTGACCCCAAGTACTACAAAGGCTCGCTGATCTACCACAACGTCACACGCATGGCCTACTGGCAGGTCCACATGGACCAGGTGGACGTGGGCAGCAGCCTGACCGTGTGTAAGGGGGGCTGTGAGGCCATCGTGGACACGGGCACCTCCCTCATCGTGGGCCCCGTGGAGGAGGTGCGGGAGCTGCAGAAAGCCATCGGGGCCTTGCCGCTGATCCAGGGCGAGTACATGATCCCCTGCGAGAAGGTGTCCAGCCTGCCCAAGGTCATCGTGAAGCTGGGGGGTAAAGGCTACAAGCTGTCCCCAGAGGACTACACACTCAAGGTGTCGCAGGCTGGGAAGACCATGTGCCTGAGCGGCTTCATGGGCATGGACATCCCCCCGCCCGGCGGGCCGCTCTGGATCCTGGGCGACGTGTTCATCGGCCGCTACTATGCCGTGTTCGACCGCGACCAGAACCGGGTGGGCTTGGCCGAGGCTGCCAGGCCATAG

Related Sequences

bmy_05016T0 SequenceType object (3)

Length: 452 aa      View alignments
>bmy_05016T0
VTSRVQTSRSADPARLRRHPGYKRATSRAVRCDRVAAAMQTPCLLLLLLLALGLLAAPAAALVRIPLHKFTSIRRTMSEMGGPMEDLIAKGPISKYSQGVPTATQGPIPEILKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWTHHKYNSGKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSGLLSLGSIKVERQTFGEATKQPGITFIAAKFDGILGMAYPRISVNNVVPVFDNLMQQKLVDKNIFSFYLNRDPNAQPGGELMLGGTDPKYYKGSLIYHNVTRMAYWQVHMDQVDVGSSLTVCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGALPLIQGEYMIPCEKVSSLPKVIVKLGGKGYKLSPEDYTLKVSQAGKTMCLSGFMGMDIPPPGGPLWILGDVFIGRYYAVFDRDQNRVGLAEAARP*