Sequence detailsbmy_05126 (Coding sequence)

Part of scaffold_177 (SequenceType object (1))

For more information consult the page for scaffold_177 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF2ENSTTRG00000000419 (Bottlenosed dolphin)

Gene Details

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000392, Bottlenosed dolphin)

Protein Percentage 96.03%
cDNA percentage 96.15%
Ka/Ks Ratio 0.31938 (Ka = 0.0247, Ks = 0.0772)

TAF2ENSBTAG00000015333 (Cow)

Gene Details

transcription initiation factor TFIID subunit 2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053499, Cow)

Protein Percentage 94.64%
cDNA percentage 91.23%
Ka/Ks Ratio 0.10221 (Ka = 0.0325, Ks = 0.3175)

TAF2 (Minke Whale)

Gene Details

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa

External Links

Gene match (Identifier: BACU013207, Minke Whale)

Protein Percentage 94.74%
cDNA percentage 95.35%
Ka/Ks Ratio 0.41434 (Ka = 0.0376, Ks = 0.0909)

Additional orthologs identified in other species via the OPTIC pipeline.

TAF2 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 3606 bp    Location:260503..330597   Strand:+
Raw sequence 
>bmy_05126
ATGCCGCCGACTGGTTTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCTTATAAATTAACTCATCAGGTCGTCTGCATCAACAACATAAACTTCCAGAGAAAATCTGTTGTGGGATTTGTGGAACTGACTATATTTCCCACAGTTGCAAACTTAAATAGAATCAAGTTGAACAGCAAACAGTGTAGAATATACCGAGTAAGGATCAATGATTTAGAAGCTGCTTTTATTTATAATGATCCAACCTTGGAAGTTTGTCACAATGAATCAAAACAGAGAAATCTCAATTATTTTTCCAATGCTTACGCAGCTGCGGTTAGTGCTGTGGATCCTGATGCAGGAAATGGAGAACTTTGCATTAAGGTTCCATCAGAGTTATGGAAACACGTTGATGAATTAAAGGTGCTAAAGATACACATCAATTTTTCTTTGGATCAGCCAAAAGGAGGTCTTCATTTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGAGAGGTGCTCATGTTTTCTCTTGTGGGTATCAAAATTCCACAAGATTTTGGTTCCCATGTGTTGATTCATACTCTGAATTATGTACATGGAAATTAGAATTTACAGTGGATGCTGCAATGGTGGCTGTTTCCAGTGGAGATTTGGTGGAGACAGTGTATACCCATGATATGAGGAAGAAAACCTTCCATTACATGCTTACCATTCCAACAGCTGCATCGAATATCTCCTTGGCCATTGGACCTTTTGAAATACTTGTAGATCCATATATGCATGAGGTTACTCATTTTTGTTTACCTCAACTTCTTCCATTGCTTAAACATACCACGTCGTATCTTCATGAAGTTTTTGAATTTTATGAAGAAATTCTTACATGTCGATACCCATATTCTTGTTTTAAGACTGTATTCATCGATGAGGCTTATGTTGAAGTGGCTGCTTATGCTTCCATGAGCATTTTTAGCACAAATCTGTTACACAGTGCCATGATTATAGATGAGACACCTTTGACTAGAAGGTGTTTAGCCCAGTCCTTGGCCCAGCAGTTTTTTGGATGTTTCATATCCAGAATGTCTTGGTCTGATGAATGGGTATTGAAGGGAATCTCAGGCTATATTTATGGTCTCTGGATGAAAAAAACTTTTGGTGTTAATGAATATCGCCATTGGATTAAAGAGGAGCTGGACAAAATAGTGGCGTACGAACTAAAAACTGGTGGAGTTTTATTACATCCCATATTTGGTGGAGGAAAAGAGAAGGATAATCCAGCATCCCATCTACACTTTTCCATAAAGCATCCACATACGCTGTCCTGGGAATACTACACTATGTTTCAGTGTAAAGCTCACCTTGTGATGAGATTGATTGAAAATAGGATCAGTATGGAATTTATGTTACAAGTAAGTATTAAAGAACTTAACAATTGTAAAGAAAGATCTGTTTTCAATAAACTGCTAAGTTTGGCTAGTACTGCTTCATCTCAGAAGTTCCAGTCACATATGTGGAGTCAGATGTTGGTTTCCACATCTGGATTTTTGAAATCCATCTCGAATGTCTCTGGCAAAGACATCCAGCCTTTAATAAAGCAGTGGGTAGACCAGAGTGGAGTGGTAAAATTTTATGGAAGTTTTGCCTTTAATAGAAAACGAAATGTCTTGGAATTGGAAATAAAACAAGATTATACATCTCCTGGAACTCAGAAATATGTGGGACCACTTAAAGTGACAGTACAGGAGTTAGATGGATCCTTCAATCATACATTGCAAATTGAAGAGAACAGTCTTAAACATGATATACCCTGCCATTCCAAAAGCCGAAGGAATAAGAAGAAAAAAATTCCCCTGATGAATGGAGAAGAAGTTGACATGGATCTTTCTGCAATGGATGCTGATTCTCCTTTGCTGTGGATAAGGATAGACCCAGACATGTCGGTACTGAGGAAAGTAGAATTTGAGCAGGCGGATTTTATGTGGCAGTATCAGCTCCGCTACGAGAGGGATGTGGTGGCACAGCAAGAGTCCATTTTGGCCTTGGAAAAGTTCCCCACTCCAGCATCTCGGCTCGCCCTTACTGACATATTAGAACAGGAGCAGTGTTTCTACCGCGTGAGAATGTCAGCTTGCTTCTGCCTTGCAAAGATTGCAAACTCAATGGTGAGCACATGGACAGGACCACCAGCCATGAAGTCACTCTTTACTAGGATGTTTTGTTGTAAAACTTGTCCAAACATTGTGAAAACAAACAACTTTATGAGCTTTCAAAGTTACTTTCTACAGAAGACTATGCCAGTTGCGATGGCTTTATTGAGAGATGTTCATAACCTTTGTCCCAAAGAAGTCTTAACATTTATTTTAGACTTAATCAAGTACAATGACAACAGAAAAAATAAGTTTTCAGATAACTATTATCGTGCAGAAATGATTGATGCCCTTGCCAACTCTGTTACGCCTGCAGTCAGTGTGAATAATGAAGTTCGAACTTTGGATAATTTAAATCCGGATGTGCGACTCATTCTTGAAGAAATCACTAGTTGTTTGAGAGCCATACGAGTGCTTCAGAAGAATGGCCATGTGCCAAGTGATCCAGCTCTTTTTAAATCTTACGCAGAATATGGCCACTTTGTGGACATCAGGATAGCAGCTTTGGAAGCAGTTGTTGACTATACTAAAGTGGACAGGAGTTATGAAGAATTGCAATGGCTACTTAATATGATTCAGAATGACCCTGTACCCTATGTAAGACATAAGATTCTAAACATGTTAACTAAGAACCCACCATTTACTAAGAACATGGAGTCTCCCTTATGCAATGAAGCTTTGGTAGATCAACTTTGGAAACTTATGAATTCTGGTACTTCACATGACTGGCGGTTACGGTGTGGTGCTGTGGACTTGTACTTCACACTTTTTGGCCTCAGTAGACCTTCCTGCTTACCCTTGCCAGAACTTGGCTTGGTCCTTAATCTGAAAGAGAAAAAAGCTGTCTTGAATCCAACCATAATTCCAGAGGCCATAGCAGGCAACCAGGAAGCTGCGGTTAATCCAAGTAGTCACACACAGCTAGTTGGATTTCAGAACCCTGAAGATGATCACCTTGCCAAGGAAGCATCATGTAATATATCAGCTCATCAGCAGGGAGTGAAGAGGAAGGCTGATACACCACTGGGGTCCCCACTAGAACCTGGTCAAATACTGGAGAAGAATGAGGATAGCAGTAAAGTCAAACTCAAAATCAGATTTTCAAGCTCTCAAGATGAGGAGGAGATTGATATGGATACTGTTCATGATAGCCAGGCGTTCATTTCCCATCATTTAAACATGCTTGAAAGGCCGTCAACTCCAGGGCTCTCTAAATATCGGCCAGCCAGCTCCCGATCTGCTTTAATCCCCCAGCACTCATCAGGTTCTGATGTCACACCCACCACAAAACCCCAGTGGAATATGGAACTTGCACGAAAGGGAACAGGTGAAATTATTATTATCATTGCTGTTGTTAATTTGCTCAAGAACGAATCTATTAACTTCATAAAATTTCTTTATCAACTTAAAGAATACATTAAAAACTACAGATCTCAGGACTTACTTTTCTTGTAA

Related Sequences

bmy_05126T0 SequenceType object (3)

Length: 1202 aa      View alignments
>bmy_05126T0
MPPTGLEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHNESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSSGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVSIKELNNCKERSVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHTQLVGFQNPEDDHLAKEASCNISAHQQGVKRKADTPLGSPLEPGQILEKNEDSSKVKLKIRFSSSQDEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPASSRSALIPQHSSGSDVTPTTKPQWNMELARKGTGEIIIIIAVVNLLKNESINFIKFLYQLKEYIKNYRSQDLLFL*