Sequence details bmy_05156 (Coding sequence)

Part of scaffold_181 (Scaffold)

For more information consult the page for scaffold_181 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM13 ENSBTAG00000008173 (Cow)

Gene Details

E3 ubiquitin-protein ligase TRIM13

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010745, Cow)

Protein Percentage 96.56%
cDNA percentage 94.43%
Ka/Ks Ratio 0.09411 (Ka = 0.0157, Ks = 0.1671)

TRIM13  (Minke Whale)

Gene Details

tripartite motif containing 13

External Links

Gene match (Identifier: BACU015792, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.51%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0088)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM13 (Human)   Trim13 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1371 bp    Location:538360..568093   Strand:+
Raw sequence 
>bmy_05156
ATGCTAGCAGGAAAGTCCCTGAAGGGCCCGAAGCAGCCCCTAAATTCCCCACAGGCAGCTCTTCACACGCTACTTGGAGGCCACCACTGGGAGGCTTTGAAAGAAGATACCGGGTTACCCATACAAGCACTCGCCAAGCCAGATGTGATGGAGCTGCTTGAAGAAGATCTCACGTGCCCAATTTGTTGCAGTCTGTTTGACGATCCTCGAGTTTTGCCTTGCTCGCACAACTTTTGCAAAAAATGCTTAGAAGGGATCTTAGAGGGGAACGTGCGGAATTCATTGTGGAGATCATCTCCATTCAAGTGCCCCACATGCCGCAAGGAAACTTCAGCCACCGGGGTCAGTAGCCTGCAGGTTAATTACTCCCTGAAGGGTATTGTGGAAAAGTATAACAAGATCAAGATCTCTCCCAAAATGCCAGTGTGCAAAGGACACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGATATGCAGCTGATCTGTGGGATCTGTGCTACTCGTGGTGACCACACCAAGCATGTCTTCTGTTCTATCGAAGATGCCTATGCTCAGGAAAGGGATGCCTTTGAGTCCCTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAGATGCTCTTTCTCGCTTGGATACCTTGGAAACTAGCAAAAGGAAATCTCTACAGTTGCTGACTAAAGATTCAGATAAAGTGAAGGAGTTTTTTGAGAAGTTACAACACACATTAGATCAAAAGAAGAATGAAATCCTTTCTGACTTTGAGACCATGAAACTTGCAGTTATGCAGGCCTATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAACAACGAATGGCCTTTAACATTGCYGAGGCTTTCAAAGATGTGTCAGAACCCATCATATTTTTGCAACAGATGCAGGAGTTCAGGGAGAAAATAAAAGTCATCAAGGAAACTCCTTTGCCTCCCTCTAATTTGCCCTCAAGCCCTTTAATGAAGAACTTTGATACCAGTCAGTGGGAAGACATAAAACTAGTAGATGTGGATAAACTTTCTTTGCCTCAAGACACTGGCACATTCATTAGCAAGATTCCTTGGAGYTTTTATCTGTTATTTGTGGTAATCATCCTGCTTGGCCTTCTCATTTTCTTCAGTCCTACCATATTCCTAGAATGGTCTTTATTTGATGAAATCACAACTTGGAAAGACAATCTTTCAAACTTTAGTTCCTACCTGACTAAATCAGCTGATTTTGTAGAACAATCAGTTTTTTACTGGGAACAGTTGGCAGATGGGTTTTTCATTTTCAGTGAAAGATTAAAGAATTTTACTTTGGTGGTGCTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTGTTATAA

Related Sequences

bmy_05156T0 Protein

Length: 457 aa      View alignments
>bmy_05156T0
MLAGKSLKGPKQPLNSPQAALHTLLGGHHWEALKEDTGLPIQALAKPDVMELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGNVRNSLWRSSPFKCPTCRKETSATGVSSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATRGDHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIIFLQQMQEFREKIKVIKETPLPPSNLPSSPLMKNFDTSQWEDIKLVDVDKLSLPQDTGTFISKIPWSFYLLFVVIILLGLLIFFSPTIFLEWSLFDEITTWKDNLSNFSSYLTKSADFVEQSVFYWEQLADGFFIFSERLKNFTLVVLNNVAEFVCKYKLL*