Part of scaffold_178 (Scaffold)

For more information consult the page for scaffold_178 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NPC1 ENSTTRG00000008862 (Bottlenosed dolphin)

Gene Details

Niemann-Pick disease, type C1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008407, Bottlenosed dolphin)

Protein Percentage 94.1%
cDNA percentage 95.5%
Ka/Ks Ratio 0.39902 (Ka = 0.034, Ks = 0.0853)

NPC1 ENSBTAG00000015195 (Cow)

Gene Details

Niemann-Pick C1 protein precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020219, Cow)

Protein Percentage 90.39%
cDNA percentage 88.72%
Ka/Ks Ratio 0.13557 (Ka = 0.0545, Ks = 0.4017)

NPC1  (Minke Whale)

Gene Details

Niemann-Pick disease, type C1

External Links

Gene match (Identifier: BACU017859, Minke Whale)

Protein Percentage 97.58%
cDNA percentage 97.82%
Ka/Ks Ratio 0.3153 (Ka = 0.0148, Ks = 0.0469)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4077 bp    Location:656605..695720   Strand:+
>bmy_05185
ATGGTTGCTTCTCGACAGTCCCTGTTTCCCTACATGATAGCTGATTGCAAGGTCACGCCGGCTGTGACCCTGGCCAGCTTGGTATTTTCACAGTCCTGTGTTTGGTATGGAGAGTGTGGAATTGCATCTGGAGATAAGAGGTACAATTGCAGATATTCTGAGCCACCAAAGCCGTTGCCAGAGGATGGCTATGACCTGGTGCAGGAACTCTGTCCAGGGTTCTTCTTCGGCRACGTCAGTCTTTGCTGTGATGTTCAGCAGCTTCGGACACTGAAAGACAACCTGCAGCTGCCTCTGCAGTTTCTGTCCAGATGTCCATCCTGTTTTTATAACCTAATGAACCTGTTTTGTGAGCTGACATGTAGCCCTCGACAAAGTGAGTTTCTGAACGTTACAGCAACGGAAGATTATGTTGATCCTGTTACAAACCAGACAAAAACAAATGTAAAAGAATTACAATACTATGTTGGAGAGAGTTTTGCCAATGCCATGTACAATGCCTGCAAGGACGTGGAGGCCCCCTCGAGTAACGAGAAAGCCCTGGGGCTGCTGTGCGGGAAGGAGGCCGAAGCCTGCAACGCCACCAACTGGATCGAGTACATGTTCAACAAGGACAACGGCCAGGCGCCTTTCACCATCACGCCCATCTTTTCAGATCTTCCAGCCCATGGGATGGAGCCCATGAACAATGCCACCAAGGGCTGTGACGAGTCCGTGGATGAGGTCACGGGGCCCTGCAGCTGCCAGGACTGCTTGATCGTCTGTGGGCCCAAGCCCCAGCCCCCAGCCCTTCCTGTTCCCTGGAGAATCCTGGGTCTGGACGCCATGTACGTCATCATGTGGAGCACCTACATGGCATTCCTGCTCGTGTTTTTTGGTGCATTCTTTGCCGTGTGGTGCTACAGAAAACGGTATTTTGTCTCCGAGTACACCCCCATTGATGGCAATATTGCTTTCTCTGTAAATGCCAGTGACAAAGGGGGGCCGTCCTGCTGTGACTCTCTGGGTGCCACCTTCGAGGCCCGTCTACAGCGGCTCTTCTCACAGTGGGGCTCGTTCTGCGTCCGACACCCCGGCTGCATCGTGTTCTTCTCCGTGGCCTTCATCGCCGCCTGTTCTTCGGGCCTGGTGTTTGTGCAGGTCACGACAGACCCGGTGGACCTGTGGTCTGCGCCCGGCAGCCAGGCGCGCCGGGAGAAGGAGTACTTCGACACACACTTCGGACCTTTCTTCCGCACCGAGCAGCTTATCATCCAAGCCCCCCTCACACAGCCGCACACGTACAGTCCCATCCCCTCTGGAGCCGATGTGCCCTTTGGGCCTCCACTTGCCCTAGACATTTTGCACCAGGTTCTTGACTTACAAACAGCCATCGAGAACATTACTGCATCTTACAACAACGAGACTGTGACACTCCAGGACATCTGCTTGGCCCCCCTCTCACCATATAACAAGCACTGCACCATCATGAGCGTGTTAAATTACTTCCAGAACAGCCATTCCGTGCTGGACCACAAACTAGGAGACTACTTCTTTGTGGCTCCCGCCTCTCTGAATGACACCAGTTTGCTCCACGATCCTTGCCTGGGGACCTTTGGTGGACCAGTGTTCCCGTGGCTTGTGTTAGGAGGCTATGATGATCAAAACTACAATAACGCCACAGCCCTTGTGATTACCTTTCCTGTCAATAATTACTGTAACGATACAGAGAAGCTCCAGAGGGCCCAGGCCTGGGAAACAGAGTTTATTAATTTTGTGAAAAACTACAAGAATCCAAATCTGACCATTTCTTTTAAGGCTGAACGAAGTATTGAAGATGAACTAAATCGTGAAAGTAACAGTGATATCTTCACTGTGGATTCGAAAATCTCCCTGGGCATCGCGGGCATCCTGATCGTGCTGAGCTCAGTGGCGTGCTCCTTGGGCATCTTCAGCTACATTGGGATCCCCTTCACCCTCATTGTGATAGAAGTCATCCCGTTCCTGGTGCTGGCTGTGGGAGTGGACAACATCTTCATTCTGGTCCAGACCTACCAGAGAGATGAACGTCTCCAAGGGGAGACGCTGGACCAGCAGGTGGGCCGGGTCCTGGGAGAAGTGGCTCCAAGTATTTTCCTGTCGTCCTTTTCAGAGACGGTAGCATTTTTCTTAGGAGGCCTGTCCGTGATGCCGGCTGTGCACACCTTCTCTCTCTTTGCGGGGATGGCGGTCCTCATTGACTTCCTCCTTCAGATTACCTGTTTTGTGAGTCTCTTGGGGTTAGACATTAAGCGGCAAGAGAAGAACCGGCTGGACATCCTCTGCTGTGTCGGGGACGCGGCAGACAGGGCAGCCATCCAGGCCTCGGAGAGCTGCTTATTTCGCTTCTTCAGAAACGCCTATGCTCCACTTCTGCTTAAGGACTGGATGCGGCCCATTGTGGTAGCGGTGTTTGTGGGTGTTCTGTCATTCAGTATCGCAGTCCTGAACAAAGTAGAAATCGGCTTGGATCAGTCTCTGTCAATGCCAGATGACTCCTACGTGACGGATTATTTCCAGTCCCTCAGTCGCTACCTGCACGCGGGCCCGCCCGTGTACTTTGTCGTGGAGGGAGGGCACGACTACGCTTCTCTGAAAGGGCAGAACATGGTGTGTGGGGGCCTGGGCTGCAACAACGACTCGCTGGTGCAGCAGATCTTCACCGCCGCCCAGCTGGACAACTATACCCGGATAGGCTTTGCTCCCTCGTCCTGGATTGACGATTATTTTGACTGGGTCAAGCCACAGTCGTCTTGCTGTAGAGTCTACAACAGCACGGATCGGTTCTGCAATGCGTCGGTGGTTGACCCTGCCTGCATCCACTGCCGGCCTCTGACTCCAGAGGGCAAGCAGAGGCCTCAGGGCGCAGACTTCATGAGGTTCCTGCCCATGTTCCTCTCCGATAACCCGAACCCCAAGTGTGGCAAAGGGGGACACGCCGCTTACAGCGCAGCAGTTAACATCCTCGGCAACGGCACGGGCGTCGGAGCCACGTACTTCATGACCTACCACACGGTGCTCAAGACCTCCGCTGACTTCATCGACGCCATGGAAAAGGCCCGCCTCATCGCCAGCAGAATCACCAGAACCATGGGCCTGGAAGGAAGTGATCACCGTGTGTTCCCATACAGTGTGTTCTACGTCTTCTACGAACAGTACCTGACCATGATTGACGACACTATCTTTAACCTCGGCGTGTCCCTGGGCGCCATCTTTTTGGTGACGGTGGTTCTCCTGGGCTGTGAGCTGTGGTCGGCGGTGATCATGTGCATCACCATCGCTATGATCTTGGTCAACATGTTCGGTGTCATGTGGCTCTGGGGCATCAGTTTGAATGCGGTTTCTTTGGTCAACTTGGTTATGAGCTGTGGCATCTCCGTGGAGTTCTGCAGCCATATCACGAGAGCGTTCACGGTGAGCACGAAGGGAAGCCGCGTGGAACGGGCAGAAGAGGCGCTCTCCCACATGGGCAGCTCTGTATTCAGTGGAATCACACTAACAAAATTTGGAGGCATTATGGTTTTGGCCTTTGCCAAATCTCAAATTTTCCAGATATTTTACTTCAGGATGTATTTAGCTATGGTCTTACTGGGAGCCACTCATGGATTAATATTCCTCCCTGTCTTGCTCAGTTACATAGGACCATCGATAAGTAAAGCCAGAAGTCTGGCCGCTCAGGAGCGATACAGAGTGTTCTCCTGTAAAGGAAAATACAGATTTAATCCGTTAGACAAGGCACGAAAGGAGGAAAACGAGAATGAACACTTTGCAGCTCCTAGATCTCTTGAGTTGTTGTCCTTTCCGTTTACCCAGCTCGTGCCATTACAGAACCTTTACAGCCCCCAGCAAACTGCCCTCTGCCCTGAGAGACAGGGGAGAAGCAGGAGTTCTCCAAACCAAAAGGCTTCTCGCCCCCCCCCAGCTGCCAGTGCTCTCCTGCTACTGTCCGAGTCCGTGGTCACCCCAGGTCTTTTCCCTGCAGCTATATTCTCACCTGGTGTGAAACTAGGGTTCCCTCGCAAACGCTGGTTTCGCTGTTCAAAAAACCGGAATATAGTG

Related Sequences

bmy_05185T0 Protein

Length: 1359 aa      View alignments
>bmy_05185T0
MVASRQSLFPYMIADCKVTPAVTLASLVFSQSCVWYGECGIASGDKRYNCRYSEPPKPLPEDGYDLVQELCPGFFFGBVSLCCDVQQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSEFLNVTATEDYVDPVTNQTKTNVKELQYYVGESFANAMYNACKDVEAPSSNEKALGLLCGKEAEACNATNWIEYMFNKDNGQAPFTITPIFSDLPAHGMEPMNNATKGCDESVDEVTGPCSCQDCLIVCGPKPQPPALPVPWRILGLDAMYVIMWSTYMAFLLVFFGAFFAVWCYRKRYFVSEYTPIDGNIAFSVNASDKGGPSCCDSLGATFEARLQRLFSQWGSFCVRHPGCIVFFSVAFIAACSSGLVFVQVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRTEQLIIQAPLTQPHTYSPIPSGADVPFGPPLALDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSPYNKHCTIMSVLNYFQNSHSVLDHKLGDYFFVAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYCNDTEKLQRAQAWETEFINFVKNYKNPNLTISFKAERSIEDELNRESNSDIFTVDSKISLGIAGILIVLSSVACSLGIFSYIGIPFTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETLDQQVGRVLGEVAPSIFLSSFSETVAFFLGGLSVMPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDILCCVGDAADRAAIQASESCLFRFFRNAYAPLLLKDWMRPIVVAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVTDYFQSLSRYLHAGPPVYFVVEGGHDYASLKGQNMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVYNSTDRFCNASVVDPACIHCRPLTPEGKQRPQGADFMRFLPMFLSDNPNPKCGKGGHAAYSAAVNILGNGTGVGATYFMTYHTVLKTSADFIDAMEKARLIASRITRTMGLEGSDHRVFPYSVFYVFYEQYLTMIDDTIFNLGVSLGAIFLVTVVLLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRVERAEEALSHMGSSVFSGITLTKFGGIMVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSISKARSLAAQERYRVFSCKGKYRFNPLDKARKEENENEHFAAPRSLELLSFPFTQLVPLQNLYSPQQTALCPERQGRSRSSPNQKASRPPPAASALLLLSESVVTPGLFPAAIFSPGVKLGFPRKRWFRCSKNRNIV