Sequence detailsbmy_05191 (Coding sequence)

Part of scaffold_187 (SequenceType object (1))

For more information consult the page for scaffold_187 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNX30ENSTTRG00000009298 (Bottlenosed dolphin)

Gene Details

sorting nexin family member 30

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008815, Bottlenosed dolphin)

Protein Percentage 90.65%
cDNA percentage 91.0%
Ka/Ks Ratio 0.36878 (Ka = 0.0687, Ks = 0.1863)

SNX30ENSBTAG00000044070 (Cow)

Gene Details

sorting nexin-30

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053240, Cow)

Protein Percentage 88.95%
cDNA percentage 87.15%
Ka/Ks Ratio 0.19412 (Ka = 0.0786, Ks = 0.405)

SNX30 (Minke Whale)

Gene Details

sorting nexin family member 30

External Links

Gene match (Identifier: BACU019559, Minke Whale)

Protein Percentage 86.84%
cDNA percentage 88.16%
Ka/Ks Ratio 0.40699 (Ka = 0.0979, Ks = 0.2404)

Additional orthologs identified in other species via the OPTIC pipeline.

SNX30 (Human)   Snx30 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1428 bp    Location:32727..144473   Strand:+
Raw sequence 
>bmy_05191
ATGTCGGGCGGGCCCCCCAAGGCCCTGCCGTCCACTGGGCCCCACTCCCTGCGCGACATGCCGCACCCGCTGGCCGGCTCCAGCAGCGAGGAGGCCGTGGGCGGCGACAGCACGCCCAGCCCGGACCTGCTGACGGCCCGCAGCTTCGGCGACAAGATGTGCCATCTTCATCTGGAGCTTACGGACATGACTGCTAGATTGACTTCTCATTTCCTACTACAACTTGATGATGACATCGATGGTGAGACCAGAGACCTCTTTGTCACGGTTGATGATCCCAAGAAGCATGTCTGTACGATGGAGACCTACATCACTTACAGGATCACCACGAAAAGTACTCGGGTGGAGTTTGACCTGCCAGAATATTCTGTTCGTCGAAGATACCAGGATTTTGACTGGTTGAGGAACAAACTGGAAGAATCCCAGCCCACTCATCTCATTCCCCCACTTCCTGAGAAGTTTGTGGTGAAAGGTGTTGTGGATCGTTTTTCAGAAGAGTTTGTGGAGACCAGAAGAAAAGCTTTGGATAAATTCCTGAAAAGAATTACAGATCATCCTGTGCTTTCTTTCAATGAACACTTTAATGTTTTCCTTACTGCTAAGGACCTGAATGCTCATAAGAAGCAAGGGATGGCGTTGCTGACTCGAGTGGGTGAGTCGGTCAAGCATGTCACTGGCGGCTACAAGCTGAGGAGTCGGCCTCTCGAGTTTGCAGCCATAGGCGAGTACTTAGACACATTTGCGCTCAAGCTGGGAACCATTGATCGAATAGCCCAGCGGATCATCAAGGAAGAAATAGAGTACCTTGTAGAGCTGAGAGAATATGGGCCTGTGTACTCCACGTGGAGTGCATTAGAGGGGGAGCTGGCCGAGCCCCTGGAGGGTGTGTCAGCCTGCATCGGCAACTGCTCTACAGCCTTGGAAGAGCTGACAGAGGACATGACAGAAGACTTTCTACCTGTGCTCAGGGAATATATTTTATACTCTGACTCCATGAAGAGCGTGCTGAAGAAAAGGGACCAAGTGCAAGCCGAGTACGAAGCCAAACTGGAAGCTGTGGCTCTGAGGAAGGAAGAGCGGCCCAAGGTACCAGCAGATGTGGAGAAATGTCAGGATCGGATGGAGTGTTTCAATGCTGATCTGAAAGCCGACATGGAGAGGTGGCAGAACAGCAAGAGGCAGGACTTCCGGCAGCTGCTCATGGGAATGGCCGACAAGAACATCCAGTAYTATGAGAAGCTTAAAGTTATCGATGAAGAATGGCCCAATGTTGTTTTCAATGAGTATTTATTCCTTGGTGGCGTCTGTAAGGCTGTCATCATCTCTCAGCAGAAGAAGCATACCTCCGTGGTGYGAAGGAACCTGTTCGGTGGGACACTACGAAGATTTGAAACTGAGGGACAAGACAGCCCTCAGCTGACATTCTGA

Related Sequences

bmy_05191T0 SequenceType object (3)

Length: 476 aa      View alignments
>bmy_05191T0
MSGGPPKALPSTGPHSLRDMPHPLAGSSSEEAVGGDSTPSPDLLTARSFGDKMCHLHLELTDMTARLTSHFLLQLDDDIDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLTAKDLNAHKKQGMALLTRVGESVKHVTGGYKLRSRPLEFAAIGEYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYEAKLEAVALRKEERPKVPADVEKCQDRMECFNADLKADMERWQNSKRQDFRQLLMGMADKNIQYYEKLKVIDEEWPNVVFNEYLFLGGVCKAVIISQQKKHTSVVXRNLFGGTLRRFETEGQDSPQLTF*