Part of scaffold_187 (Scaffold)

For more information consult the page for scaffold_187 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF4 ENSTTRG00000003246 (Bottlenosed dolphin)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog (yeast)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003043, Bottlenosed dolphin)

Protein Percentage 73.12%
cDNA percentage 73.72%
Ka/Ks Ratio 0.42583 (Ka = 0.0223, Ks = 0.0523)

PRPF4 ENSBTAG00000004571 (Cow)

Gene Details

U4/U6 small nuclear ribonucleoprotein Prp4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006004, Cow)

Protein Percentage 96.42%
cDNA percentage 92.71%
Ka/Ks Ratio 0.08341 (Ka = 0.0219, Ks = 0.2622)

PRPF4  (Minke Whale)

Gene Details

pre-mRNA processing factor 4

External Links

Gene match (Identifier: BACU018726, Minke Whale)

Protein Percentage 90.0%
cDNA percentage 91.6%
Ka/Ks Ratio 0.56122 (Ka = 0.0766, Ks = 0.1364)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 840 bp    Location:478308..507914   Strand:+
>bmy_05198
ATGCTTTCCTTTGTGTTTGTTAGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCTGATTGCAACCTCCTCCATACTCTTCGAGGCCATAACACAAATGTGGGAGCAATTGTATTCCATCCAAAATCCACTGTCTCCTTGGACCAAAAAGATGTCAATCTGGCCTCTTGTGCTGCTGATGGTTCTGTGAAGCTTTGGAGCCTTGACAGTGATGAGCCAGTGGCAGATATTGAAGGCCATACAGTGCGTGTGGCCCGTGTAATGTGGCATCCATCAGGACGTTTCTTAGGTACCACCTGCTATGACCGTTCATGGCGCTTATGGGATTTGGAGGCTCAAGAGGAAATCCTGCATCAGGAAGGCCACAGCATGGGTGTGTATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGACTGGATGCATTTGGTCGAGTTTGGGACCTGCGTACAGGACGTTGCATCATGTTCCTAGAAGGTCACCTGAAGGAAATCTATGGAATAAATTTCTCCCCCAATGGTTACCACGTTGCAACTGGCAGTGGTGACAACACCTGCAAAGTGTGGGACCTTCGACAGCGGCGTTGTGTCTATACCATTCCTGCCCACCAGAACTTAGTGACTGGTGTCAAGTTTGAGCCTATCCATGGGAATTTCTTGCTTACTGGTGCCTATGATAACACAGCCAAGATCTGGACCCACCCAGGCTGGTCGCCACTGAAGACTCTGGCTGGCCACGAAGGCAAAGTGATGGGCCTAGACATTTCTTCCAATGGGCAGCTCATAGCCACTTGCTCATATGACAGGACCTTCAAGCTCTGGATGGCTGAATAG

Related Sequences

bmy_05198T0 Protein

Length: 280 aa      View alignments
>bmy_05198T0
MLSFVFVRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSNGQLIATCSYDRTFKLWMAE*