Sequence details bmy_05214 (Coding sequence)

Part of scaffold_187 (Scaffold)

For more information consult the page for scaffold_187 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL27A1 ENSTTRG00000005438 (Bottlenosed dolphin)

Gene Details

collagen, type XXVII, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005161, Bottlenosed dolphin)

Protein Percentage 93.16%
cDNA percentage 95.15%
Ka/Ks Ratio 0.5909 (Ka = 0.0275, Ks = 0.0465)

COL27A1 ENSBTAG00000019807 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001200, Cow)

Protein Percentage 74.89%
cDNA percentage 77.56%
Ka/Ks Ratio 0.44179 (Ka = 0.2079, Ks = 0.4706)

COL27A1  (Minke Whale)

Gene Details

collagen, type XXVII, alpha 1

External Links

Gene match (Identifier: BACU007313, Minke Whale)

Protein Percentage 97.91%
cDNA percentage 99.02%
Ka/Ks Ratio 1.23862 (Ka = 0.0099, Ks = 0.008)

Additional orthologs identified in other species via the OPTIC pipeline.

COL27A1 (Human)   Col27a1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3420 bp    Location:1271291..1377019   Strand:+
Raw sequence 
>bmy_05214
GGGTTTCTCTTCACCTGGATCTTAGTCTCACTTGCCTGTCACCTGGCTTCCACCCAAGGAGCTCCTGAAGATGTGGACGTCCTCCAGCGGCTGGGCCTCAGCTGGACGAAGGCAGTGGGCGGCCGGAGCCCCCCGCCCCCAGGGGTCATTCCGTTCCAGTCAGGCTTCATCTTTACGCAGCGGGCCCGGCTCCAGGCCCCCACGGCTGCCGTCGTCCCTGCCGCCCTGGGCACAGAGCTGGCGCTGGTGCTGAGCCTCTGCTCCCACCGGGTGAACCATGCCTTCCTCTTCGCCGTCCGCAGCCGGAAGCACAAGCTGCAGCTGGGCCTGCAGTTTCTCCCCGGCAAGACAGTCGTCCACCTGGGGCCCCGGCGCTCCGTGGCCTTCGACCTCGACGTGCACGACGGGCGCTGGCACCACCTGGCCCTGGAGCTCCGCGGCAGCACCGTCACCCTGGTGACGGCCTGCGGGCAGCACCGGGTGCCTGTCCCGCTGCCTTTCCACAGGGACCCAGCACTTGACCCCGAGGGCTTGTTCCTTTTTGGGAAGATGAGCCCACACGCAGTCCAGTTTGAAGGTGCCCTGTGCCAGTTCAGTATCTACCCCGTGACGCAGGTCGCTCACAATTACTGTACCCACCTGAGAAAGCAGTGTGGGCAGGCTGACACGTACCGGCCCCAGCTGGGACCCTTCCTCCCCCGAGACTCTGGCACACCCCTCACCTTCCAGACCGACCTTGCCCTGCTGGGCCTGGAGAACCTGACCACTGCCACGCCAGCCCTGGCGTCACGGCCAGCAGGCAGGGGGCCCAGGGTGACTGTGGTGCCTGCCATGCCCGCCAAGCCCCTAAGGACTAGCACCACAGGCCTGCACCAGCCCGTCACAGGTGGAGGCCCAGCCCGGACCCTCCTGCCACCTGCCAAGCTGTCAGCCAGTGGAGGGCTGCCTCCCGTGCCCCCAGCCTCTCCTGCCAGCTCCACCAGACCTGTCCAGCCACTGCAGAAGAGCACAGCCAYCAAAATCCCCAAAAGTCACCCCACCAAGCCTTCAGCCCCTTCTCCTTCAATTGCCCCTGTCAAAAGTCCCCGCCCCACCCAGAAGACAGCTCCGCCTTCCTTCACAAAGTCAGCCCCACCCACCAAGAAGCCGGTGCTACCCACTTCCCACCCAGTTCCTGCCAAAGTCTCCTGTCCCACAGTGAAGCCCATCCAGAGGAACCCTGTAACGCCCAGACCCCCAGCACCCAGCACCCGGCCCCTACCTCCTGCTGCCAGCTCCTCTAAAAAGTCTTTTCCCCCAGTGGTCCAGGCTGAGACCAAGATGAGCAGTCGTGTCAGTGAGCCGGCTCCTGCCCGCACCAACACACACAGACCTCCCCGACCCACTGTCGTGCCCCCATCACCTGCCCCCAGTCCTAGTGCTTCCAGGACTGCTCGGCCACAAGCCACAGCAATGCCTCCCACCCTCGCTCCTGGTTCAGCCCCCACTGGAAGCAAGAAACCCACTGGATCAGAAGCCACAAAGAAAGCCAGATCCAAGAGCAGCCCCTGGAAGCCCGTCCCTCTCAGACCTGGGAAGGCAGCCAGGGATGTCCCGTTTAACCATCCGACAAGTGGGCCGAGCCCCAGACGGCTGCGGCCCAGCCAGCAGACCACCCCGGCCCCGGCGCTGGCCCCGGCGCAATTCCTGTCCTCCAGCCCCCAGCCCATGAGCACTGGCTCTTCGTTCTTCCACCYGGTGGGACCCACACCTTTCCTGCTGCTGATGGGACCTCCGGGGCCCAAGGGAGACTGTGGTTTACCGGGTCCCCCTGGGCTGCCTGGGCTCCCTGGACCTCCTGGTACACGGGGTCCTCGGGGTCCTCCTGGGCCTTATGGAAATCCAGGCCTCCCCGGCCCTCCTGGAGCCAAAGGACAGAAAGGGGACCCCGGGCTCTCACCAGGAAAGGCTCACGATGGGGCAAAGGGCGACGTGGGCTTGCCTGGGCTCTCTGGGAATCCAGGACCTCTTGGACGAAAGGGACACAAGGGCTATCCTGGACCGGCGGGGCACCCCGGAGAACAGGGGCAGCCGGGACCCGAGGGCAGCCCAGGGGCCAAAGGTTACCCTGGCAGGCAGGGCTACATTGGACTCCCAGGGCTCTTCGGCCTGCCAGGGTCCGATGGAGAGCGAGGTCTGCCTGGCGTTCCTGGCAAGAGGGGCAAGATGGGTAGGCCGGGAGAACTGGGCTTACCAGGGCCCCTAGGAGTCCCTGGCCTCCTTGGCGACATGGGAGCATTGGGTCCAATTGGCTACCCAGGACCCAAGGGCATGAAGGGACTGATGGGAAACGTGGGGGAACCCGGACTGAAAGGTGATAAGGGTGAACAAGGGGTTCCGGGTGTGTCAGGAGATACCGGATTCCAAGGAGACAAGGGGAGCCAGGGATTGCCAGGGTTCCCAGGCGCACGGGGGAAGCCAGGGCCTGTGGGCAAAGTTGGAGACAAAGGATCCGTTGGGTTTCCTGGGCCCCCTGGACCCGAGGGATTTCCCGGAGACATTGGCCGCCCTGGGGACAACGGCCCAGAAGGCATGAAGGGTAAGCCTGGAGCTCGAGGCCTGCCGGGACCCCGTGGGCAGCTGGGGCCAGAGGGAGATGAGGGACCCATGGGGCCACCAGGGGCCCCTGGCTTGGAGGGTCAACCCGGCAGAAAGGGGTTTCCTGGAAGGCCTGGCCCGGATGGCTTGAAGGGACTTCTGGGATTCATTGGTCTGGTCGGGGAGCCAGGAATCATGGGAGAAAAGGGTCATCCTGGAACTCCAGGTGGTGTTGGGACCCCCGGAGAGCCTGGACCTACGGGTCCTCCAGGATCTCGAGGCCCGCTGGGCATGAGGGGAGCAAAGGGACGCCGGGGACCCCGAGGACCAGATGGACCAGCTGGGGAGCAGGGGTCCAGGGGTCTGAAGGGCCCTCCAGGACTACAGGGCAGACCAGGCCAGCCTGGGCAGCAGGGCATCCCGGGTCCCTCCGGCCCCCCAGGTACCAAGGGCCTCCCAGGAGAACCGGGCCCTCAGGGACCCCAGGGGCCAATGGGCCCTCCGGGAGAGATGGGACCCAAGGGAGAGCCAGGCCTCGAGGGTGACAGTGGCCCTGCAGGGCCCGACGGGCTGAAGGGGGACAGGGGTGACCCCGGGCCCGACGGTGAACGTGGCGAGAAGGGCCAGGAGGGACTGAAGGGTGAGGACGGGCCGCCCGGCCCCCCTGGCATCACTGGCGTCCGGGGTCCTGAAGGAAAACCAGGGAAGCAAGGCGAGAAGGGCCGCATGGGAGCCAAGGGTGCCAAGGGCTACCAAGGACAGCTGGGTGAGATGGGCGTCCCTGGAGACCCCGGACCCCCTGGCACCCCAGGCCCTAAAGGGTCCCGGGGCAGCCTGGGACCA

Related Sequences

bmy_05214T0 Protein

Length: 1140 aa      View alignments
>bmy_05214T0
GFLFTWILVSLACHLASTQGAPEDVDVLQRLGLSWTKAVGGRSPPPPGVIPFQSGFIFTQRARLQAPTAAVVPAALGTELALVLSLCSHRVNHAFLFAVRSRKHKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGSTVTLVTACGQHRVPVPLPFHRDPALDPEGLFLFGKMSPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQADTYRPQLGPFLPRDSGTPLTFQTDLALLGLENLTTATPALASRPAGRGPRVTVVPAMPAKPLRTSTTGLHQPVTGGGPARTLLPPAKLSASGGLPPVPPASPASSTRPVQPLQKSTAXKIPKSHPTKPSAPSPSIAPVKSPRPTQKTAPPSFTKSAPPTKKPVLPTSHPVPAKVSCPTVKPIQRNPVTPRPPAPSTRPLPPAASSSKKSFPPVVQAETKMSSRVSEPAPARTNTHRPPRPTVVPPSPAPSPSASRTARPQATAMPPTLAPGSAPTGSKKPTGSEATKKARSKSSPWKPVPLRPGKAARDVPFNHPTSGPSPRRLRPSQQTTPAPALAPAQFLSSSPQPMSTGSSFFHXVGPTPFLLLMGPPGPKGDCGLPGPPGLPGLPGPPGTRGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDVGLPGLSGNPGPLGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGELGLPGPLGVPGLLGDMGALGPIGYPGPKGMKGLMGNVGEPGLKGDKGEQGVPGVSGDTGFQGDKGSQGLPGFPGARGKPGPVGKVGDKGSVGFPGPPGPEGFPGDIGRPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGPDGLKGLLGFIGLVGEPGIMGEKGHPGTPGGVGTPGEPGPTGPPGSRGPLGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGLQGRPGQPGQQGIPGPSGPPGTKGLPGEPGPQGPQGPMGPPGEMGPKGEPGLEGDSGPAGPDGLKGDRGDPGPDGERGEKGQEGLKGEDGPPGPPGITGVRGPEGKPGKQGEKGRMGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGP