Sequence details bmy_05229 (Coding sequence)

Part of scaffold_184 (Scaffold)

For more information consult the page for scaffold_184 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SPAST ENSTTRG00000000536 (Bottlenosed dolphin)

Gene Details

spastin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000502, Bottlenosed dolphin)

Protein Percentage 83.22%
cDNA percentage 85.83%
Ka/Ks Ratio 0.57129 (Ka = 0.0948, Ks = 0.1659)

SPAST ENSBTAG00000021694 (Cow)

Gene Details

Spastin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000044166, Cow)

Protein Percentage 91.96%
cDNA percentage 91.37%
Ka/Ks Ratio 0.23586 (Ka = 0.0563, Ks = 0.2388)

Additional orthologs identified in other species via the OPTIC pipeline.

SPAST (Human)   Spast (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1365 bp    Location:975621..1016150   Strand:+
Raw sequence 
>bmy_05229
ATGAAATTTGCATATAATTGTTACCACTTTAAAGAAGTATCCTACACATATTTTGATTATGCTGAATTTTTAGGTGAACAGTGTGACAGAGCTAGACGCCTTCAAGCTAAAATGATGACTAATTTGGTTATGGCCAAGGACCGTTTACAACTATTAGAGAAGCTGCAGCCAGTTTTGCAGTTTTCCAAGTCACAAACGGACGTCTATAATGACAATACTAACTTGACATGCCGCAATGGACATCTCCAGTCAGAAAGTGGAGCTGTTCCGAAAAGAAAAGATCCCTTAACGCACACTAGTAATTCACTGCCTCGTTCAAAAACAGTTATGAAAACTGGATCCACAGCTCTTTCAGGCCACCACAGAGCACCTAGCTGCAGTGGTTTATCCATGGTTTCTGGAGTGAGACAGGGACCTGGTCCTGCAACTGCCACTCATAAGAGTACACCAAAAACAAATAGAACAAATAAACCTTCTACCCCTACAACTGCTGCTCGTAAAAAGAAAGACTTGAAGAACTTTAGGAATGTGGACAGCAACCTTGCTAACCTTATAATGAACGAAATTGTGGACAATGGAACAGCTGTTAAATTTGATGATATAGCTGGTCAAGAGTTGGCAAAACAAGCATTGCAAGAAATTGTTATTCTTCCTTCTCTGAGGCCTGAGGCTAAAGCAGTAGCTGCAGAATCTAATGCAACCTTCTTTAATATAAGTGCTGCAAGTTTAACTTCAAAATACGTGGGAGAAGGAGAGAAATTGGTGAGAGCTCTTTTTGCTGTGGCTCGAGAACTTCAACCTTCTATAATTTTTATAGATGAAGTTGATAGCCTTTTGTGTGAAAGAAGAGAAGGAGAACATGATGCTAGTAGACGTCTAAAAACTGAATTTCTAATAGAATTTGATGGTGTACAATCTGCTGGAGATGACAGAGTGCTTGTAATGGGTGCAACTAACAGGCCACAAGAGCTTGATGAGGCTGTTCTCAGGCGTTTCACCAAACGGGAACTCTCAAAAAATTGTTATTTTAACAGATATATGTGTGAGGCTACACGACTACTTTTATTAAAAAATCTATTATGTAAACAAGGAAGCCCATTGACCCAAAAAGAACTAGCACAACTTGCTAGAATGACCGATGGATACTCAGGAAGTGATCTAACAGCTTTGGCAAAAGATGCAGCACTGGGTCCTATCCGAGAACTGAAACCAGAACAAGTGAAGAATATGTCTGCCAGTGAGATGAGAAATATTCGATTATCTGACTTCACCGAATCCTTAAAAAAGATAAAACGCAGCGTGAGTCCTCAAACCTTAGAAGCATACATACGTTGGAACAAGGATTTTGGAGATACTACTGTTTAA

Related Sequences

bmy_05229T0 Protein

Length: 455 aa      View alignments
>bmy_05229T0
MKFAYNCYHFKEVSYTYFDYAEFLGEQCDRARRLQAKMMTNLVMAKDRLQLLEKLQPVLQFSKSQTDVYNDNTNLTCRNGHLQSESGAVPKRKDPLTHTSNSLPRSKTVMKTGSTALSGHHRAPSCSGLSMVSGVRQGPGPATATHKSTPKTNRTNKPSTPTTAARKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPEAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRELSKNCYFNRYMCEATRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTTV*