Part of scaffold_176 (Scaffold)

For more information consult the page for scaffold_176 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDH16 ENSTTRG00000010162 (Bottlenosed dolphin)

Gene Details

cadherin 16, KSP-cadherin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009643, Bottlenosed dolphin)

Protein Percentage 97.29%
cDNA percentage 97.94%
Ka/Ks Ratio 0.31939 (Ka = 0.0135, Ks = 0.0423)

CDH16 ENSBTAG00000009585 (Cow)

Gene Details

cadherin-16 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000012610, Cow)

Protein Percentage 88.66%
cDNA percentage 90.89%
Ka/Ks Ratio 0.25579 (Ka = 0.0592, Ks = 0.2313)

CDH16  (Minke Whale)

Gene Details

cadherin 16, KSP-cadherin

External Links

Gene match (Identifier: BACU018089, Minke Whale)

Protein Percentage 98.58%
cDNA percentage 98.88%
Ka/Ks Ratio 0.28759 (Ka = 0.0068, Ks = 0.0236)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2640 bp    Location:856048..864783   Strand:+
>bmy_05292
ATGTCCCTCAGGCCCATCCTGACCATGGTCCCTGCCCGGCTGTGTCTGCTTTGCCTCTTCATCCCCCAGGTGAGTTGGGCCCTGCTCCTCACCCTCAGATCCTGGCTTTGGTTGGTACCCTCGCCCCCTACTCTACCTGGACCAGTGGCACTGACTATGGATGGTAGTGTTTGGGGGATGGTGATGAGAGCTGGCTACAGGCCTGTTGTGGGGTCAGGAGGTCAAAGGCCAGGGGGTGCATGGGCTAAGGTATGGCCAGGCCCAGGGAAGCGGCAGAATTCCCCTTCCCTGTCAGGTTCCGGCACCCATGGCAGGAAGGTACAGCTTGCTGACGTGGTGAGAATCCTCCCACAGGCTTTCCCCAGGGCCCAGCCTGCAGAGGTGTATGTGGACGTCCCGGAAAACTACGGTGGAAATTTCCCTTTGTACTTGACCAAGCTACCGCTGCCCCGTAAGGAGACTGAGGGCCAGATTGTTCTGTCAGGAGACTCAGGCGTGGCAGCTGAGGGCCCCTTTGCTGTGGATCCAGAGTCTGGCTTCCTGCTGGTGACCAGGGCCCTGGACCGGGAGGAACAGGCAGAGTACCAGCTACAGGTCACCCTGGAGACAGAGGATGGACGTGTCTTGTGGGGCCCGCAGCATGTGCTTGTGCATGTGAAGGATGAGAATGACCAGGTGCCCCATTTCTCCCAGGCCATCTACAAAGTTCAGCTGAGCCAGGGCACCAGACCTGGGAGCACCAGCCTAGATCAGGCTCTGGAGGGGCCATACCAGCTGTTGGTACAGGTCAAGGACATGGGTGACCAGGCCTCGGGCCACCAGGCCACAGCCACCATAGATGTCTCCATAGTGGAAAACACCTGGGTGCCCCTAGATCCTGTCCACCTGGCAGAGAATCTCCAAGTTCCGTACCCACACCACATTGCCCAGGTACATTGGAGTGGGGGGGATGTACATTATCACCTGGAGAGCCAGCCCCTTGGACCCTTTGATGTGGACAAGGAGGGGAAACTCTACGTGACCAGGGAGCTGGACCGAGAAGCCCAGGCTGAGTACCTGCTCCGGGTGCGGGCTCAGAATACCCGCGGTGAGGACTACGCCGAACCTCTGGAGCTGCATGTGGTGGTGATGGATGAGAATGACAACATGCCTGTCTGCCCCCCACGAGGCCCCGCAATCAGCATTCCTGAGCTCAGCCCCCCAGGTACCAAGGTGGCTAAGCTTTCGGTAGAGGATGCAGATGCCCCCGGTTCCCCCAATTCCCACATTGTGTATCAGCTGCTGAGCCTTGAGCCCGAGGAGGGGGCAGAGGGGAGAGCTTTCGAGCTGGACTCCACCTCGGGCAGTGTGACACTGGGGGCTGCCCCCCTCCAAGCTGGCCAGAACATCTTGCTTCAGGTGCTGGTCACTGACCTGGGAGGAGCAGAGGGCGGCCTCAGCAGCACCTGTGAGATTGCAGTCACGATCACGGACATCAATGACCATGCCCCTGAGTTCACCACTTCCCAGATTGAGCCCCTAAGCCTCCCTGAGGACACAGAGCCTGGGACTCTGGTGACCACACTCATGGCCACTGACGCCGACCTTGAGCCTGCCTTCCGCCTCATGGACTTTGCCATTGAGGCAGGGGATGTGGAGGGAACCTTCGGCCTGGATTGGGAGCCAGACTCTGGTCGTGTCCAGCTGCGACTCCTCAAGAACCTCAGCTATGAGGCAGCTCCAAGTCACAAGTTGGTGGTGGTGGTGCGGAGCGTGGCAGAGCCGGTGGGGCCAGACCCAGGCCCTGGAGCTACAGTCACCGTGACTGTGCTGGTGGAAAGGGTGGTGCCACCCCCTCAGTTGGACCAGGAGAGCTACGAGGCCAGTGTCCCAGTCAGCACCCCCGCTGGCTCCCTCCTGCTGACCATCCGGCCCTCAGACCCCATGAGCAGTCCCCTCAGGTTCTCCCTGGTCAACGACTCAGAGGGCTGGCTCTGCATCGAGGAGGTCTCCGGGGAAGTGCACATAGCCCGGCCCCTGCAGGGTGCCCAGCCTGGGGACATGTACACAGTGCTCGTGGAGGCCCAGGATGCAGATGAGCCAACGCTGAGCACCTCTGCGACCCTCGTGATCCACTTCCTGAAGGCCCCTTCTGCCCCAACCCCGACTCTGGCTCCTGTGCCCTCCCGACACCTCTGCACACCCCGCCAGGACCGTGGCGTGGTTGTCGGTGGACCCAGAGGGGACCCTGACCTGGCCGGCGGACACGGTCCCTACAGCTTTGCCCTTGGTCCCAACCCCACGGCGCAGCGGGATTGGCGCCTCCGGGCTCTCAATGGGTCCCATGCCTACCTCACCCTGGGCCTGCATTGGGTGGAGCCACGCGAACACGTAGTCCCCATAGTTGTCAGCCACCATGACCTGGTGTGGCAGATCCAGGTCCGAGTGATCGTGTGTCGCTGCAATGTGGAGGGGCAGTGCATGCGCAAGGTGGGCCGCATGAAGGGCATGCCCACGAAGCTGTCAGCGGTGGGCATCCTCGTGGGCACCCTGATAGCAATAGGCATCTTCCTCATCCTCATCTTCACCCACTTGACCCTGGCGAGGAAGAAGGACCTAGATCAGCCTGTAGACAGTGTGCCCCTGAAGGCGGCGGTTTAA

Related Sequences

bmy_05292T0 Protein

Length: 880 aa      View alignments
>bmy_05292T0
MSLRPILTMVPARLCLLCLFIPQVSWALLLTLRSWLWLVPSPPTLPGPVALTMDGSVWGMVMRAGYRPVVGSGGQRPGGAWAKVWPGPGKRQNSPSLSGSGTHGRKVQLADVVRILPQAFPRAQPAEVYVDVPENYGGNFPLYLTKLPLPRKETEGQIVLSGDSGVAAEGPFAVDPESGFLLVTRALDREEQAEYQLQVTLETEDGRVLWGPQHVLVHVKDENDQVPHFSQAIYKVQLSQGTRPGSTSLDQALEGPYQLLVQVKDMGDQASGHQATATIDVSIVENTWVPLDPVHLAENLQVPYPHHIAQVHWSGGDVHYHLESQPLGPFDVDKEGKLYVTRELDREAQAEYLLRVRAQNTRGEDYAEPLELHVVVMDENDNMPVCPPRGPAISIPELSPPGTKVAKLSVEDADAPGSPNSHIVYQLLSLEPEEGAEGRAFELDSTSGSVTLGAAPLQAGQNILLQVLVTDLGGAEGGLSSTCEIAVTITDINDHAPEFTTSQIEPLSLPEDTEPGTLVTTLMATDADLEPAFRLMDFAIEAGDVEGTFGLDWEPDSGRVQLRLLKNLSYEAAPSHKLVVVVRSVAEPVGPDPGPGATVTVTVLVERVVPPPQLDQESYEASVPVSTPAGSLLLTIRPSDPMSSPLRFSLVNDSEGWLCIEEVSGEVHIARPLQGAQPGDMYTVLVEAQDADEPTLSTSATLVIHFLKAPSAPTPTLAPVPSRHLCTPRQDRGVVVGGPRGDPDLAGGHGPYSFALGPNPTAQRDWRLRALNGSHAYLTLGLHWVEPREHVVPIVVSHHDLVWQIQVRVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGILVGTLIAIGIFLILIFTHLTLARKKDLDQPVDSVPLKAAV*