Part of scaffold_176 (Scaffold)

For more information consult the page for scaffold_176 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDH5 ENSTTRG00000011013 (Bottlenosed dolphin)

Gene Details

cadherin 5, type 2 (vascular endothelium)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010433, Bottlenosed dolphin)

Protein Percentage 89.09%
cDNA percentage 90.24%
Ka/Ks Ratio 0.24206 (Ka = 0.013, Ks = 0.0539)

BT.64659 ENSBTAG00000007421 (Cow)

Gene Details

cadherin-5 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009760, Cow)

Protein Percentage 82.23%
cDNA percentage 84.17%
Ka/Ks Ratio 0.17008 (Ka = 0.1122, Ks = 0.6599)

CDH5  (Minke Whale)

Gene Details

cadherin 5, type 2 (vascular endothelium)

External Links

Gene match (Identifier: BACU018079, Minke Whale)

Protein Percentage 99.31%
cDNA percentage 99.31%
Ka/Ks Ratio 0.11843 (Ka = 0.0029, Ks = 0.0244)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2199 bp    Location:1311708..1288820   Strand:-
>bmy_05308
ATGCAGGTGCTCGTGGTGCTGCTGGCTGCAGGGGGCACCTGCCTGGGCCTGCTGGCAGCAACTGCAGCAGCCGTCAACCCTGGCCGACCCAACACCCCCAGCTCGCTGCCCGTTCACCGGCGCCAGAAGAGAGACTGGATCTGGAACCAGATGCACATCGATGAAGAGAAAAACGGCTCACTGCCCCACTATGTGGGCAAGACTTTGGTCTATGGAATTAAATCAAGCGTGAACCGCAAGAACACCAAGTACCAGCTCAAAGGAGAGTCTGCCGGCAAGGTCTTCCAGGTTGATGAGAGCACGGGGGACGTGTATGCCTTTGAGAGGCTGGACAGGGAGAAGCTCTCTGAGTACCACCTCGTCGCCCTCGTGGTAGACAAGGACACTGAGAAGAACCTGGAGTCTCCTTCCAGCTTCACCATCAAAGTTCACGATATCAACGACAACTGGCCTGTGTTCACGCACCGGGTGTTCAATGCCTCCGTGCCCGAGATGTCAGGGATAGGGACCTCGGTCATCCAGGTGACAGCAGTGGATGCAGATGACCCCACTGTGGCAGACCACGCCTCTGTCATGTACCAACTCCTGAAGGGAGAAGAACATTTCAGCATCCGTGGCTCTGCCAGGTACATATTTTCTGTGCCCGAAGACATCCGTGTGGGCAGCCCCCTGGGCTCTCTGTTTGTGGAGGACCCAGACGAGCCCCAGAACCGGAAGACAAAGTACAGCATCGTGCAGGGCGAGTACAGGGACACCTTCACCATCGAGCCTGACCCCACCCGCAACGAGGGCATCATCAAGCCCATGAAGCCCCTGGACTATGAACACATCCGGCAATACAGCTTCACCATCGAGGCCACGGACCCCACCATCGACCTCCGCTACCTGAGCAGCACCTCCACCAAGAACATCGCCCGTGTCATCATCAACGTCACAGATGTGGACGAGCCCCCCAGCTTCCAGCAGCCCTTTTACCACTTCCAGCTGCGGGAGAACCAGAAGAAACCTCTGATCGGCTCAGTGCTGGCCGTGGACCCCGATGCCGCTAAGCGGAGCATCAGATACTCCATCCGCAGGACGAGTGACAAGGGCCAGTTCTTCGGAATAACCAAGCAGGGGAATATTTACAATGAGAAGGAGCTGGACAGAGAAGTCTACCCCTGGTGTAACCTGACAGTGGAGGCCAAAGAGCTGGATTCTAGTGGGACCCCCACGGGCAAAGAATCCATTGTGCAGGTCCACATCGAAGTTATGGATGAGAACGACAATGCCCCAGAGTTTGCCAAGCCCTACGAGCCCAAAGTGTGTGAGAACGCTGCCCAGGGCAAGCTGGTCGTGCAAATCTCGGCAATAGACAAGGATATAACGCCACGAGATGTGAAGTTCAAGTTTTCCCTGAGCACTGAGGACAGCAACTTCACCCTCACGGATAATCACGATAACACGGCCAACATCACAGTCAAGTACGGGTATTTTGACCGAGAGCGCGCCAAAGTCCACCACCTGCCCGTGCTCATCTCGGACAACGGGAGGCCAAGCCTCACAGGCACCAGCATGCTGGATGTGACCGTGTGCAAGTGCAACGAACGCGGCGAGTTCACCTTGTGTGAGGAGGTGGCCGCCCAGGTGGGCGTCAGCATCCAGGCGCTGGTAGCTATCTTCCTTTGCATCCTCACCATCACAGTGATCACCCTCCTCATCATCCTGCGGCGGCGGCTCCGGAAGCAGGCCCGCGCCCACGGCAAGAGCGTGCCGGAGATCCACGAGCAGCTGGTCACCTACGACGAGGAGGGCGGCGGCGAGATGGACACCACCAGCTACGACGTGTCGGTGCTCAACTCGGTGCGCCACGGTGGGACCAAGCCCCCGCGGCCGGCGCTGGACACGCGGCCGTCCCTCTACGCACAGGTGCAGAAGCCGCCGCGGCACGCGCCCGGGGCGCACGGGCCCGGGGAGATGGCCGCGATGATCGAGGTGAAGAAGGACGAGGCGGACCACGACGGCGGCGGCCCACCCTACGACACGCTGCACATCTACGGCTACGAAGGCGCCGAGTCCATCGCCGAGTCCCTCAGCTCCCTGGGCACCGATTCATCTGACTCGGACATCGATTATGACTTTCTCAATGACTGGGGGCCCAGGTTCAAGATGCTGGCCGAGCTGTATGGCTCGGAGCCCCGGGAGGAGCTGGTGTATTAG

Related Sequences

bmy_05308T0 Protein

Length: 733 aa      View alignments
>bmy_05308T0
MQVLVVLLAAGGTCLGLLAATAAAVNPGRPNTPSSLPVHRRQKRDWIWNQMHIDEEKNGSLPHYVGKTLVYGIKSSVNRKNTKYQLKGESAGKVFQVDESTGDVYAFERLDREKLSEYHLVALVVDKDTEKNLESPSSFTIKVHDINDNWPVFTHRVFNASVPEMSGIGTSVIQVTAVDADDPTVADHASVMYQLLKGEEHFSIRGSARYIFSVPEDIRVGSPLGSLFVEDPDEPQNRKTKYSIVQGEYRDTFTIEPDPTRNEGIIKPMKPLDYEHIRQYSFTIEATDPTIDLRYLSSTSTKNIARVIINVTDVDEPPSFQQPFYHFQLRENQKKPLIGSVLAVDPDAAKRSIRYSIRRTSDKGQFFGITKQGNIYNEKELDREVYPWCNLTVEAKELDSSGTPTGKESIVQVHIEVMDENDNAPEFAKPYEPKVCENAAQGKLVVQISAIDKDITPRDVKFKFSLSTEDSNFTLTDNHDNTANITVKYGYFDRERAKVHHLPVLISDNGRPSLTGTSMLDVTVCKCNERGEFTLCEEVAAQVGVSIQALVAIFLCILTITVITLLIILRRRLRKQARAHGKSVPEIHEQLVTYDEEGGGEMDTTSYDVSVLNSVRHGGTKPPRPALDTRPSLYAQVQKPPRHAPGAHGPGEMAAMIEVKKDEADHDGGGPPYDTLHIYGYEGAESIAESLSSLGTDSSDSDIDYDFLNDWGPRFKMLAELYGSEPREELVY*