Part of scaffold_186 (Scaffold)

For more information consult the page for scaffold_186 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDH1 ENSTTRG00000015988 (Bottlenosed dolphin)

Gene Details

cadherin 1, type 1, E-cadherin (epithelial)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015153, Bottlenosed dolphin)

Protein Percentage 90.43%
cDNA percentage 93.78%
Ka/Ks Ratio 0.71106 (Ka = 0.0598, Ks = 0.0841)

BT.64827 ENSBTAG00000015991 (Cow)

Gene Details

cadherin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021272, Cow)

Protein Percentage 88.66%
cDNA percentage 90.03%
Ka/Ks Ratio 0.2631 (Ka = 0.0643, Ks = 0.2445)

CDH1  (Minke Whale)

Gene Details

cadherin 1, type 1, E-cadherin (epithelial)

External Links

Gene match (Identifier: BACU018135, Minke Whale)

Protein Percentage 97.08%
cDNA percentage 98.27%
Ka/Ks Ratio 0.50099 (Ka = 0.0141, Ks = 0.0281)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2574 bp    Location:1126270..1048170   Strand:-
>bmy_05328
ATGGGCCCTCCGTGCCGCGGCCTCTCTGCGCTCCTGCTGCTGCTGCTGCTGCAGTTTCCTAATCACTGTGATTTATGCCCTGCAGTGAGTTTTGAAGGATGCACCGGTCTACCAAGGACAGTCTATGTTTCTGATGACACCCGATTCAAAGTGGGCACAGATGGCGTGGTTACAGTCAAACGGCCTTTACACCTTCATCATCCAGAGATGAGTTTTCTTGTCCACGCCTGGGACTCCACCCGCAGGAAGCTCTCCACCAAAGTGACCCTGAAGGCAGTAGTGCACCACCATCGCCACCACCATCATCATGACTCTCCCTCTGGAACCCAGAGAGAAGTGGTCACATTTCCCAGCTCCCACCATGGTCTCAGGAGACAGAAGAGAGACTGGGTTATTCCTCCTATCAGCTGCCCAGAAAATGAGAAAGGCCCATTTCCTAAGGCTCTGGTTCAGATCAAATCTAACAGGGACAAAGAAACCCAAGTTTTCTACAGCATCACTGGCCAAGGAGCCAACACACCCCCTCTTCATGTGTTTATTATTGAAAGAGAAACAGGATGGCTAAAGGTGACGGAACCTCTGGATAGAGAAGACATTGCCAAGTACATTCTCTTCTCTCATGCTGTGTCTTCGAACGGGCAAGCAATCGAGGAGCCGATGGAGATTGTGATCACCGTGACTGATCAGAATGACAACAAGCCTGAGTTCACCCAGGGGGTCTTCAAGGGGTCTGTCATGGAGGGCGCTCTTCCAGGGACCTCTGTGATGGAGGTCTCAGCCACAGACGCAGACGACGATGTGAACACCTACAACGCTGCCATTGCTTACTCCATCCTCAGCCAAGATCCTGTGCTGCCACACAACAAAATGTTCACCATCAACAGGGACACGGGCGTCATCAGTGTGCTCACCACCGGGCTGGACCGGGAGAGTTTTCCCACGTATACCCTGGTGGTTCAAGCTGCAGACCTTCAAGGTGACGGCTTAAGCACGACCGCAACAGCTGTGATCACAGTCAATGACACCAACGATAACCCTCCCATCTTCAACCCAACCACGTACGTGGGGTCGGTGCTTGAGAACGAGGCTAACGTGGTCATCACCACACTCAAAGTGACCGATGCCGACGTCCCCAATACACCAGCGTGGGAGGCCGTTTACACAATATTAAACGATAACGAGAAGCAGTTTGTTGTCATCACAGACCCAGTAACCAATGCCGGCATTTTGAAGACGGCTAAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATCCTGTATGTGACAGTGACTAATGCAGCCCCCTTTGAGGTCACTCTCTCCACTTCCACAGCCACCGTCACCGTGGACGTGATAGATGTGAACGAAGCCCCCATCTTCATGCCTCCTCAGAAGAAAGTGAAAGTGCCCGAGGACTTCGGCTTGGGCCTGGAGATCACGTCCTACACCGCCCAGGAGCCAGACAAATTTATGGAACAGAAGATCACGTATCGGATTTGGAGGGACGCTGCCAACTGGCTGGCGATTAATCCGGACACGGGTGCCATTTCCACTCGGGCTGAGTTGGACAGAGAGAACGTCGAGCATGTGAAGAACAGCACGTACACGGCCCTCATTATAGCCACTGACAATGGTTCTCCACCTGCTACTGGAACGGGAACCCTGCTACTATTCCTCGATGACGTGAATGACAATGGCCCCATACCAGAACCTCGGAACATGGACTTCTGCCAGAGGAATCCACAGCCTTATATCATCAACATCATTGATCCTGATCTTCCCCCCAACACTTCTCCCTTCACAGCAGAACTAACACATGGGGCAAGTGTCAACTGGACCATTGAGTACAATGACCCAGAACATGAATCTCTGATTTTTAAGCCAAAGAAAACCCTAGAGGTGAGTGACTACAAAATCAATCTCAAGCTCATAGACAACCAGAACAAAGACCAAGTGACCACCTTAGATGTGCACGTGTGTGACTGTGAAGGGGTCGTCAGCGACTGTACGAAGGTCGGGTCTTACGCCGAAGCAGGATTGCGAGTTCCCGCCATTCTGGGGATTCTTGGAGGCATTCTTGCTTTTCTGATCCTGATTCTGCTGCTTCTGCTACTTGTTCGGAGGAGAAGGGTAGTCAAAGAGCCCTTACTGCCCCCAGAAGACGACACCCGGGACAACGTTTATTCCTATGATGAAGAAGGAGGTGGAGAAGAAGACCAGGACTATGACCTGAGCCAGCTACACAGGGGCCTGGATGCTCGGCCCGAAGTGACTCGCAATGATGTGGCGCCAACCCTCCTGAGTGTGCCCCAGTATCGACCCCGACCTGCCAATCCTGATGAAATTGGAAACTTTATTGATGAAAACCTGAAGGCAGCTGATAGTGACCCCACCGCCCCACCCTATGACTCTCTGCTGGTGTTTGATTATGAAGGAAGCGGTTCCGAAGCTGCTAGTCTGAGCTCCCTGAACTCCTCGGAGTCAGACCGAGACCAGGACTATGAGTACCTGAACGAATGGGGCAATCGCTTCAAGAAGCTGGCGGACATGTATGGAGGCGGCGAGGACGACTAG

Related Sequences

bmy_05328T0 Protein

Length: 858 aa      View alignments
>bmy_05328T0
MGPPCRGLSALLLLLLLQFPNHCDLCPAVSFEGCTGLPRTVYVSDDTRFKVGTDGVVTVKRPLHLHHPEMSFLVHAWDSTRRKLSTKVTLKAVVHHHRHHHHHDSPSGTQREVVTFPSSHHGLRRQKRDWVIPPISCPENEKGPFPKALVQIKSNRDKETQVFYSITGQGANTPPLHVFIIERETGWLKVTEPLDREDIAKYILFSHAVSSNGQAIEEPMEIVITVTDQNDNKPEFTQGVFKGSVMEGALPGTSVMEVSATDADDDVNTYNAAIAYSILSQDPVLPHNKMFTINRDTGVISVLTTGLDRESFPTYTLVVQAADLQGDGLSTTATAVITVNDTNDNPPIFNPTTYVGSVLENEANVVITTLKVTDADVPNTPAWEAVYTILNDNEKQFVVITDPVTNAGILKTAKGLDFEAKQQYILYVTVTNAAPFEVTLSTSTATVTVDVIDVNEAPIFMPPQKKVKVPEDFGLGLEITSYTAQEPDKFMEQKITYRIWRDAANWLAINPDTGAISTRAELDRENVEHVKNSTYTALIIATDNGSPPATGTGTLLLFLDDVNDNGPIPEPRNMDFCQRNPQPYIINIIDPDLPPNTSPFTAELTHGASVNWTIEYNDPEHESLIFKPKKTLEVSDYKINLKLIDNQNKDQVTTLDVHVCDCEGVVSDCTKVGSYAEAGLRVPAILGILGGILAFLILILLLLLLVRRRRVVKEPLLPPEDDTRDNVYSYDEEGGGEEDQDYDLSQLHRGLDARPEVTRNDVAPTLLSVPQYRPRPANPDEIGNFIDENLKAADSDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDRDQDYEYLNEWGNRFKKLADMYGGGEDD*