Part of scaffold_186 (Scaffold)

For more information consult the page for scaffold_186 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDH3 ENSTTRG00000015986 (Bottlenosed dolphin)

Gene Details

cadherin 3, type 1, P-cadherin (placental)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015149, Bottlenosed dolphin)

Protein Percentage 70.09%
cDNA percentage 71.2%
Ka/Ks Ratio 0.32027 (Ka = 0.0234, Ks = 0.073)

CDH3 ENSBTAG00000033248 (Cow)

Gene Details

Cadherin-3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042970, Cow)

Protein Percentage 90.48%
cDNA percentage 91.04%
Ka/Ks Ratio 0.1763 (Ka = 0.0481, Ks = 0.2729)

CDH3  (Minke Whale)

Gene Details

cadherin 3, type 1, P-cadherin (placental)

External Links

Gene match (Identifier: BACU018133, Minke Whale)

Protein Percentage 98.64%
cDNA percentage 98.54%
Ka/Ks Ratio 0.15552 (Ka = 0.0062, Ks = 0.0397)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1989 bp    Location:1173866..1157590   Strand:-
>bmy_05329
GTAGTTTTCACGGAGTGCCCTAGGCAAGAGTTGGCCCTGCTGACTGATGATGACTTCACTGTTCTGAACAACAAAACAGTCCAGGAAAGGAAAGCACTGAAGATCTCCCCATCCAAACGTATCTTGCGAAGACGCAAGAGAGATTGGGTGGTCCCGCCAATATCTGTCCCTGAGAATGGCAAGGGTCCCTTCCCCCAGAAGCTGCATCAGCTCAAATCTAATAAAGACAGAGGCACCAAGATTTTCTACAGCATCACGGGGCCTGGGGCAGACAGCCCCCCTGAGGGTGTCTTCACCATAGAGAAGGAAACAGGCTGGCTGGTACTGAATAAACCACTGGACCGGGAGAAAATTGCCGAGTATGAGCTCTTTGGCCAYGCTGTGTCGGAGAACGGTGCCTCCGTGGAAGAGCCCATGAACATCTCCATCATTGTAACAGACCAGAATGACCACAAGCCCAAGTTCACCCAGGATGTCTTCAGAGGGAGCGTCTTGGAAGGGGTACTACCCGGCACTTCTGTGATGCAGGTGACAGCCACGGATGAGGACGATGCCATCAACACCTACAACGGGGTGGTTGCTTATTCCATCCATAGTCAAGAGCCACAGGACCTCATGTTCACGGTCCACCGGAGCACAGGCACCATCAGCGTCGTCTCCAGTGGCCTGGACCGGGAGAGAGTCCCTGAGTACACACTGACCATCCAGGCTACGGACATGAACGGGGATGGCTCCAGCACCACGGCTATGGCCGTAGTGGAAATCCTCGATGCCAATGACAACGCTCCTGTGTTTGAGCCCCAGAAGTACGAGGCCCGTGTGCCTGAGAACGCAGTGGGCCACGAGCTGCAGAGGCTGACTGTGACCGATCTGGATGCCCCCAACTCACCGGCATGGCAGGCTACCTATCGCATTGTGGAAGGTGACAACGGGGACCATTTTACCGTCACCACCCACCCTGAGAGCAACCAGGGTATCCTGACAACCAAGAAGGGCTTGGATTTCGAGGCCAAAACCCAGCACACCCTGTACGTTGAAGTGATCAACGAGGCTCCCTTTGTGGTGAAGCTCCCAACCTCCACGGCCACCGTAGTGGTCCACGTGGAGGATGTGAATGAGCCGCCCGTCTACCACATCCTGAGAGACCCGGCAGGGTGGCTAGCAATGGACCCAGCCAGTGGGCAGGTCACTGCTGCAGGGGTCTTGGACCGTGAGGATGAGCAGTTTGTGAGGACCAACATCTACGAAGTCATGGTCTTGGCCACGGACGATGGGAGCCCTCCCACCACTGGCACGGGGACCCTCCTGCTAACACTGATGGATGTCAACGACCATGGCCCGGTCCCTGAGCCCCGTCAGATCACCATCTGCAACCAAAGCCCTTTGCCTCAGGTGCTGAACATCACAGACAAGGACCTGTCCCCCCACACCTCCCCTTTCCGGGCCTGGCTCACACACGACTCGGACATCTACTGGACGGCAGAGGTCAATGAGAAAGGAGACACAGTGGCCTTGTCCCTGAAGAAGTTCCTGAAGCAAGATACATACGACGTGCACCTTTCTCTGTCCGACCACGGCGACAAGGAACAGCTGACGGTGATCAGGGCCACCGTGTGCGACTGCCACGGCCATGTGGAGACCTGCCCCGAACGCTGGAAGGGGAGTTTCCTCCTCCCCATCCTGGGTGCTGTCCTGGCTCTGCTGTTCCTCCTGCTGGTGCTCCTGTTTTTGGTGAGAAAGAAACGGAAGATCAAGGATCCCCTTCTGCTCCCAGAAGACGACACCCGTGACAACGTCTTCTACTACGGCGAAGAGGGGGGTGGCGAGGAGGACCAGGACTATGACATCACCCAACTCCACCGGGGCCTGGAAGCCCGGCCTGAGTTGGTTCTCCGCAACGATGTGGCGCCAGCCTTCATCCCCACACCCACATACCGTCCACGGCCAGCCAACCCAGATGAAATCGGCAACTTCATCATCGAGAAATAG

Related Sequences

bmy_05329T0 Protein

Length: 663 aa      View alignments
>bmy_05329T0
VVFTECPRQELALLTDDDFTVLNNKTVQERKALKISPSKRILRRRKRDWVVPPISVPENGKGPFPQKLHQLKSNKDRGTKIFYSITGPGADSPPEGVFTIEKETGWLVLNKPLDREKIAEYELFGHAVSENGASVEEPMNISIIVTDQNDHKPKFTQDVFRGSVLEGVLPGTSVMQVTATDEDDAINTYNGVVAYSIHSQEPQDLMFTVHRSTGTISVVSSGLDRERVPEYTLTIQATDMNGDGSSTTAMAVVEILDANDNAPVFEPQKYEARVPENAVGHELQRLTVTDLDAPNSPAWQATYRIVEGDNGDHFTVTTHPESNQGILTTKKGLDFEAKTQHTLYVEVINEAPFVVKLPTSTATVVVHVEDVNEPPVYHILRDPAGWLAMDPASGQVTAAGVLDREDEQFVRTNIYEVMVLATDDGSPPTTGTGTLLLTLMDVNDHGPVPEPRQITICNQSPLPQVLNITDKDLSPHTSPFRAWLTHDSDIYWTAEVNEKGDTVALSLKKFLKQDTYDVHLSLSDHGDKEQLTVIRATVCDCHGHVETCPERWKGSFLLPILGAVLALLFLLLVLLFLVRKKRKIKDPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPELVLRNDVAPAFIPTPTYRPRPANPDEIGNFIIEK*