Sequence detailsbmy_05345 (Coding sequence)

Part of scaffold_194 (SequenceType object (1))

For more information consult the page for scaffold_194 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

XRN2ENSTTRG00000009087 (Bottlenosed dolphin)

Gene Details

5'-3' exoribonuclease 2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008648, Bottlenosed dolphin)

Protein Percentage 83.35%
cDNA percentage 84.81%
Ka/Ks Ratio 0.40082 (Ka = 0.068, Ks = 0.1696)

XRN2ENSBTAG00000011304 (Cow)

Gene Details

5'-3' exoribonuclease 2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015019, Cow)

Protein Percentage 88.86%
cDNA percentage 88.52%
Ka/Ks Ratio 0.2176 (Ka = 0.0739, Ks = 0.3397)

XRN2 (Minke Whale)

Gene Details

5'-3' exoribonuclease 2

External Links

Gene match (Identifier: BACU014850, Minke Whale)

Protein Percentage 91.98%
cDNA percentage 93.13%
Ka/Ks Ratio 0.40397 (Ka = 0.0563, Ks = 0.1393)

Additional orthologs identified in other species via the OPTIC pipeline.

XRN2 (Human)   Xrn2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3330 bp    Location:860863..808890   Strand:-
Raw sequence 
>bmy_05345
ATGTGGACTTTGAATGTAGAGCCAAAAGAATGCAGTGGTGTAAAGATTCCTGTCGATGCCAGTAAACCTAATCCAAATGATGTGGAGTTTGATAATCTGTATTTGGATATGAATGGAATCATCCATCCCTGTACTCATCCTGAAGACAAACCAGCACCGAAAAACGAGGATGAAATGATGGTTGCAATCTTTGAGTACATTGACAGGCTTTTCAATATTGTAAGACCAAGACGACTTCTCTACATGGCAATAGACGGAGTGGCGCCACGCGCTAAAATGAACCAGCAGCGTTCAAGGAGGTTCCGAGCATCCAAAGAAGGAATGGAAGCAGCAGTAGAGAAGCAGCGAGTCAAGGAAGAAATACTGGCAAAAGGTGGCTTTCTTCCTCCAGAAGAAATAAAGGAAAGATTTGACAGCAACTGCATTACACCAGGAACTGAGTTCATGGACAATCTTGCTAAATGCCTTCGCTATTACATAGCTGATCGTTTAAATAATGACCCAGGGTGGAAAAATTTGACAGTTATTTTATCTGATGCTAGTGCTCCTGGTGAAGGGGAACATAAAATCATGGATTACATTAGAAGACAAAGAGCCCAGCCTAACCACGACCCAAACACTCATCATTGCTTATGTGGAGCAGATGCTGATCTCATTATGCTCGGCCTTGCTACACATGAGCCCAACTTTACCATTATCAGAGAAGAATTCAAACCAAACAAACCCAAACCCTGTGGTCTTTGTAATCAGTTTGGACATGAGCACGATGAACTGGCAGACAGTCTTCCTTGTGCAGAAGGAGAGTTTATCTTCCTTCGTCTCAGTGTTCTTCGTGAGTATTTGGAAAGAGAGCTCACCATGGCCAGCCTGCCGTTCACATTTGATGTTGAGAGGAGCATTGATGACTGGGTCTTCATGTGCTTCTTTGTGGGAAATGACTTCCTTCCTCACCTGCCGTCCTTAGAGATTAGGGAAGGTGCAATTGACCGTTTGGTTAACATATACAAAAATGTGGTACACAAAACTGGGGGTTACCTTACAGAAAGTGGTTATGTCAATCTGCAGAGAGTACAGATGATCATGTTAGCAGTTGGTGAAGTTGAGGATAGCATTTTTAAAAAGAGAAAGGATGATGAGGACAGTTTTAGAAGACGACAGAAAGAAAAAAGAAAGAGAATGAAGAGAGATCAACCTTCTTTCTCTCCTGGTGGAATATTAACCCCTCATGCCCTTGGTTCAAGAAACTCACCAGGATCTCAAGTAGCCCATAATCCGAGACAAGCAGCCTATGAAATGAGGATGCAGAATAACTCTAGTCCTTCAGTGTCTCCTAATGCGAGTTTCACTTCTGATGGCTCCCCATCTCCGAGAGGAGGAATTAAGCGAAAAGCGGAAGACAGTGACAGTGAACCTGAGCCAGAGGATAACGTCAGGTTATGGGAAGCTGGTTGGAAACAGCGGTACTACAAGAACAAATTTGATGTTGACGCAGCTGATGAGAAATTCCGACGTAAAGTTGTGCAGTCTTACGTTGAAGGACTCTGCTGGGTTCTTCGATATTATTACCAGGGTTGTGCGTCCTGGAAGTGGTATTATCCATTCCATTATGCACCGTTCGCTTCAGACTTTGAAGGTATTGCAGATATGGCTTCTGATTTTGAGAAGGGTACCAAACCGTTTAAACCACTGGAACAACTTATGGGGGTTTTTCCAGCTGCAAGTGGTAACTTTCTACCTCCATCATGGCGGAAGCTCATGAGTGATCCCGATTCTAGTATAATTGACTTCTACCCGGAAGATTTTGCTGTTGATTTGAATGGGAAGAAGTATGCATGGCAAGGTGTGGCTCTGTTGCCGTTCGTGGATGAGCGAAGACTGCGAGCTGCCCTGGAAGAGGTGTACCCGGACCTCACCCCTGAAGAGAATAGAAGAAACAGTCTTGGAGGCGATGTCTTATTTGTGGGGAAACATCACCCACTGCACGACTTCCTTTTAGAGCTGTACAAGACAGGTTCCACAGAGGGATCTGACACAGAACGCTGCGATCAGTTTGCTGAAGATTACATTTTTAAAGCCGTAATGCTTCCGGGAGCAAGAAAACCTGCACCGGTACTGAAACCTGGCGACTGGGAGAAATCCAGCAACGGGCGGCAGTGGAAGCCCCAGCTCAGCTTTAACCGGGACCGGCGGCCCGTCCACCTGGATCCAGCGGCCTTCAGGGCTTTGGGCCATGTTATGCCCAGAGGCTCTGGAACTGGCGTTTACAGCAATGCTGCACCACCACCTGCGACTTACCAGGGAAACTTGTACCGGCCACTGTTGAGAGGACAAGCCCAGATTCCAAAGCTTATGTCAAAAAAAGGTATGCGAAACAAGCTCCTGTTTATTCCATTAATACAGAAAAAACAGGAAGGGCTACTCTATTGCAGAGAACCCTCAGAACTCCTTTTAAACCAAAGTTACACCTGTCAAAGAAAGAACCAGATTAAACCCTGTAAGAAAGGAGTTCTGATGATCTCCTTCTCTCAGGGTCCTGTTTTCACCGTGTTCTGTCTGTCTGTGTGTCTCTCTGTGTGGCTTAATGACACTGAATGGCGCATTTTCCTTTTTCCTTGTGGCTCTTTGCCATTTATTTCTATCTCTACTGGTATCAGAGCTTCCAAACACGGGGACAAAATGAGATGCAAGTGCTGGAACCAGGGAGAGATGGTGAAAGTCTGGACTGATCTGTGGCGAAGTGGATTCCAAGTGGAGAAGGTGGGAATGGAGGCACTAAAGGGCTGCGTAGTTGAACGTGCGAAGTGCGGGAGAGAGAAGATTCCAGATGAGGCTCCTTGTGCACTGAGGGCACCTGGGGGACTAGAGAGTTTGGAAGCACAGGAGGATGGAGGAAGGTGGAAGAACATGATAGTTCTGATGTGTGTGGAGGTTGAAATGCCTGAAGACATTGATGCCATCTGCCTGGAGTTTACTGTCATTAAGATTTTTCTGGCATATTTATTTCATGGTCTCTTTGAATGTAAAAATCGTATTAAAAGAAAAAAGAGCAGTGATTCCAGATGTTTTACCCAAGATCTTTTCTTATTTTCTCCCCATGAATCTGTGTTTGTCAAGATGCTTACTCCCGAAGTGCATGTGTTAATAATGCAATTCACTATCTCACATTTTTTTTTCTCCCTCTCAAATGGATCTTTTAGAGCCATACAAATGAATGATAATAAGTTTGTTTTACATTCTACTTCATTACTTCTCAGCCAGGAAATATTTCTGCTTTATGAACACTTAAGGGCCATATATATTGCTCAGAGCCACATGAAGAGATTTGTTTAA

Related Sequences

bmy_05345T0 SequenceType object (3)

Length: 1110 aa      View alignments
>bmy_05345T0
MWTLNVEPKECSGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVKEEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEHDELADSLPCAEGEFIFLRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPSFSPGGILTPHALGSRNSPGSQVAHNPRQAAYEMRMQNNSSPSVSPNASFTSDGSPSPRGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMASDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAVDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKHHPLHDFLLELYKTGSTEGSDTERCDQFAEDYIFKAVMLPGARKPAPVLKPGDWEKSSNGRQWKPQLSFNRDRRPVHLDPAAFRALGHVMPRGSGTGVYSNAAPPPATYQGNLYRPLLRGQAQIPKLMSKKGMRNKLLFIPLIQKKQEGLLYCREPSELLLNQSYTCQRKNQIKPCKKGVLMISFSQGPVFTVFCLSVCLSVWLNDTEWRIFLFPCGSLPFISISTGIRASKHGDKMRCKCWNQGEMVKVWTDLWRSGFQVEKVGMEALKGCVVERAKCGREKIPDEAPCALRAPGGLESLEAQEDGGRWKNMIVLMCVEVEMPEDIDAICLEFTVIKIFLAYLFHGLFECKNRIKRKKSSDSRCFTQDLFLFSPHESVFVKMLTPEVHVLIMQFTISHFFFSLSNGSFRAIQMNDNKFVLHSTSLLLSQEIFLLYEHLRAIYIAQSHMKRFV*