Sequence detailsbmy_05364 (Coding sequence)

Part of scaffold_185 (SequenceType object (1))

For more information consult the page for scaffold_185 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RAPGEF1ENSTTRG00000009204 (Bottlenosed dolphin)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008740, Bottlenosed dolphin)

Protein Percentage 78.69%
cDNA percentage 80.57%
Ka/Ks Ratio 0.35724 (Ka = 0.1616, Ks = 0.4523)

RAPGEF1 (Minke Whale)

Gene Details

Rap guanine nucleotide exchange factor (GEF) 1

External Links

Gene match (Identifier: BACU016198, Minke Whale)

Protein Percentage 88.97%
cDNA percentage 91.86%
Ka/Ks Ratio 0.42066 (Ka = 0.0695, Ks = 0.1653)

Additional orthologs identified in other species via the OPTIC pipeline.

RAPGEF1 (Cow)   RAPGEF1 (Human)   Rapgef1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1662 bp    Location:433347..407132   Strand:-
Raw sequence 
>bmy_05364
ATGGCACCTGCGGGGGGAGGGCACTGTGGACGCTCAGGCCCCACAGCCCTCGGGGGGAGAGCAGCCGAGCCAGGGGTCCACCACCCCCAGCTTCTCTCAAAAGAAGGGATGTGGACGAATCGGAACCAGTCCTACTCCCAGGATTTCGTGCCTCACAGCCAAGCTTCCGTCCAGCCTTTCCTCCCGTCTACCTCCTCTTCCTCTCCACATTTCCCACCTGTGCACCAGTCTCAGAGCTCTGACTTAGCGGTGCCAGCCGTAGCCAGTCCGCCTCCCAGCACCCTGGACGGGCCTCTCTCATCTTCTCAGGAGAGCAGCTTTCATGGGAACACTGTCTGCCTTCCTTCCGAAACCTCTTTCACTGACTCGCCCCAGACGCCTTCGGAATCACCAGCGTCGAAGGACGGACATCCCAGAGACGCCTCGTCGGCCGGCAGTGCACCTGGGAAGGAAAGCAGGGACGGCGGGGACAGGGCCCTGAAGTCACCAGATGCTCCAGAGGCTCAGTCGGAGGAGGAAGTAGACGAGCTGTCCCTCATTGACCACAATGAGATCATGGCAAGGCTGACGCTCAAGCAAGAGGGCGACGACGGACCAGACGTCCGGGGAGGATCTGGTGACATCCTACTGGTCCACGCTACTGAGACGGACAGGAAAGATCTGGTGTTGTACTGTGAGGCCTTCTTGACCACCTACAGGACCTTCATCACCCCTGAGGAGCTCATCAAGAAGCTGCACCTAGTGGAGTTGACGGAGGAGATCTTGAAGCTGCTGATGGAGCTGGTCTTCCGCCTGGTGTGCAGCGGGGAGCTCAGTCTGGCCCGTGTGCTCCGGAAGAACATCCTGGACAAGGCAGAGCAGAGGAGGCTGCTCAGGTGTGCCGACTCCGACCAGCCCCTGGCGGCCAGGGGCGTGGCAGCCAGGCCCGGGACCTTGCATGACTTTCACAGCCATGAGATAGCCGAGCAGCTGACACTGCTAGATGCCGAGCTCTTTTATAAGATAGAGATTCCTGAGGTTTTGCTTTGGGCAAAAGAGCAGAACGAGGAGAAGAGCCCCAACTTGACCCAGTTCACGGAGCACTTCAACAACATGTCCTACTGGGTCCGGTCAATCATCATGTTACAGGAAAAGGCCCAAGACAGGGAACGGCTGCTCTTGAAGTTCATCAAGATCATGAAGCACTTACGGAAGCTGAACAACTTCAACTCCTACCTGGCCATCCTCTCGGCGCTGGACTCGGCCCCTATCCGCAGGCTGGAGTGGCAGAAGCAGACCTCAGAGGGCCTGGCGGAGTACTGCACGCTGATTGACAGCTCGTCCTCCTTCCGCGCCTACCGGGCCGCCCTCTCGGAGGTGGAGCCGCCGTGCATCCCATACCTGGGGCTCATCCTGCAGGACCTCACCTTCGTTCACCTGGGAAACCCAGACTATATTGACGGGAAGGTGAATTTTTCCAAACGGTGGCAGCAGTTCAACATCCTGGACAGCATGCGGTGCTTCCAGCAGGCGCATTATGACATCCGGAGAAACGACGACATCATAAACTTCTTCAACGACTTCAGTGACCACCTGGCCGAGGAGGCGCTATGGGAACTCTCTCTGAAAATCAAACCCAGGAACATAACACGGAGGAAAACAGACCGGGAAGAGAAGACCTAG

Related Sequences

bmy_05364T0 SequenceType object (3)

Length: 554 aa      
>bmy_05364T0
MAPAGGGHCGRSGPTALGGRAAEPGVHHPQLLSKEGMWTNRNQSYSQDFVPHSQASVQPFLPSTSSSSPHFPPVHQSQSSDLAVPAVASPPPSTLDGPLSSSQESSFHGNTVCLPSETSFTDSPQTPSESPASKDGHPRDASSAGSAPGKESRDGGDRALKSPDAPEAQSEEEVDELSLIDHNEIMARLTLKQEGDDGPDVRGGSGDILLVHATETDRKDLVLYCEAFLTTYRTFITPEELIKKLHLVELTEEILKLLMELVFRLVCSGELSLARVLRKNILDKAEQRRLLRCADSDQPLAARGVAARPGTLHDFHSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSIIMLQEKAQDRERLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQKQTSEGLAEYCTLIDSSSSFRAYRAALSEVEPPCIPYLGLILQDLTFVHLGNPDYIDGKVNFSKRWQQFNILDSMRCFQQAHYDIRRNDDIINFFNDFSDHLAEEALWELSLKIKPRNITRRKTDREEKT*