Sequence details bmy_05379 (Coding sequence)

Part of scaffold_185 (Scaffold)

For more information consult the page for scaffold_185 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TSC1 ENSTTRG00000014398 (Bottlenosed dolphin)

Gene Details

tuberous sclerosis 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013668, Bottlenosed dolphin)

Protein Percentage 97.06%
cDNA percentage 97.18%
Ka/Ks Ratio 0.30064 (Ka = 0.017, Ks = 0.0565)

TSC1 ENSBTAG00000005190 (Cow)

Gene Details

TSC1 protein; Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006842, Cow)

Protein Percentage 91.72%
cDNA percentage 90.74%
Ka/Ks Ratio 0.17715 (Ka = 0.0462, Ks = 0.2606)

TSC1  (Minke Whale)

Gene Details

tuberous sclerosis 1

External Links

Gene match (Identifier: BACU016187, Minke Whale)

Protein Percentage 88.09%
cDNA percentage 90.39%
Ka/Ks Ratio 0.76604 (Ka = 0.0971, Ks = 0.1267)

Additional orthologs identified in other species via the OPTIC pipeline.

TSC1 (Human)   Tsc1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3276 bp    Location:1577536..1546694   Strand:-
Raw sequence 
>bmy_05379
ATGGCCCAACAAGCAAATATTGGGGAGCTCCTCTCCATGTTGGATTCCCCCATGCTGAGTGTGCGTGATGATGTAACAGCTGTCTTTAAAGAGAACCTCAATTCTGACCGTGGTCCGATGCTTGTGAACACCTTGGTGGATTATTACCTGGAAACCAATTCTCAGCCTGTATTGCACATCCTGACTACCTTGCAAGAGCCACATGATAAGCACCTCTTGGACAAAATGAATGAATACATGGGCAAAGCCGCCTCTCGGTTATCCACCCTCTCGTTACTGGGCCACGTTGTGAGGCTGCAGCCGTCTTGGAAGCATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTTTACTAAAATGTCTCAAGATGGACACCGATGTCATTGTCCTCACAACAGGGGTCTTAGTGTTGATAACCATGCTACCAATGATTCCACAGTCGGGGAAACAGCACCTTCATGATTTCTTTGATATTTTTGGCCGTCTTTCGTCRTGGTGCCTGAAGAAACCAGGTAAAGATCTCCTTCTATACCTGTCATGCCCCACCAAGTGGAAGAGATTAGAAACACATGATGTTGTCATAGAATGTGCCAAAATCTCTCTGGACCCTACCGAAGCCTCCTATGAAGATGGCTATTCTGTGTCTCACCAAATCTCAGCCCGTTTTCCTCATCGTTTGGCCGACGTCACCGCCAGCTCTTATGTTGACACACAGAATAGCTATGGGAGTGCTACTTCTACCCCTCACTCCACTTCTCGGCTGATGTTGTTAAACACGCCAGGGCAGCTACCTCAGACTCTGAGTTCCCTGTCGACACGGCTGTTAACTGAGCCGCCACAAGCTACTCTTTGGAGCCCATCTGTGGTTTGTGGGATGACCACTCCTCCAACTTCTCCTGGAAATGTCCCACCTGATTTGTCACACCCTTACAGTAAAGTCTTTGGTACAGCGGGTAGAAAAGGAACTCCTCTGGGAACCCCTGCAACCTCTCCTCCTCCAGCCCCACCCTGCCATTCGGATGACTACGTGCACATTTCACTCCCGCAGGCCATGGCCACAGCCCCCAAGAAGGAAGAGAGAACAGATKCTGCAAGGCCCTGTCTACATAGACAACACCATCTTCCGAATGACAGAGGATTAGAAGAGCTACCTGGGAGCAAAGGGTCTGTCACTCTCAGTGATCTTCCAGGGTTTTTAGGTGACCTGGCTTCTGAAGAAGATAGTATTGAAAAAGATAAAGAAGAAGCGGCAATATCTAAAGAACTCTCTGAGATCACAACAGCCGACGCCGAGCCCCTAGCTCCTCGCGGAGGCTTTGACTCTCCCTTCTACCGGGACAGTCTCCCGGGCTGCCCGCGGAAGACCCACTCAGCCGTCTCCAGTGCCCAGGGCACCGGTGCGAACCCTGAGCCTCTGAACTCCACCCTGGACAGGCTGGGGCCTGACACCCCAAAGCAAGCCTTTACCCCCATAGACCTGCCCTGCGGAGGCGCCGAGGAGAGCCCTGCCGGGGACAGAGAGCGCCAGGCCTCTCTGGAGAGCAGCATCCTCACTCCCAGCCCTTTTAAAATTCCACCTCAGAGGGGAGTGGGGTTTGGCAGTGGGCAGCCTCCCCCATACGATCATCTTTTTGAGGTGGCACTGCCAAAGACTGCCCGTCATTTTGTCAGCAAGAAGACGGAGGGACTGCTAAAGAAAGCAAAAGGGAACACAGAGGAGGACTGCACGCCCTCTGCCTCCCCCATGGAAGTGCTRGACAGACTGATACAGCAAGGGGCAGACGCGCACAGCAAGGAGCTCAACAGGTTGTCTTTACCCAGCAAGTCTGTCGACTGGACCCACTTCGGAGGCTCCGCTCCCTCAGATGAGACCCGCTCCCTCCGTAACCAGTTGCTCTTACTGCACAACCAGTTACTCTATGAGCGTTTTAAGAGGCAGCAGCACGCGCTTCGGAACAGGCGGCTCCTGCGCAAGGTGATCAGGGCAGCTGCTCTGGAGGAGCACAACGCTGCCATGAAAGACCAGTTGAAGTTACAAGAGAAAGACATCCAGATATGGAAGGTTAGTCTGCAGAAAGAACAAGCCAGATACAGTCAGCTTCAGGAGCAGCGAGACACGGTGGTCACCCAGCTCCACAGCCAGATCAGACAGCTTCAGCACGACCGGGAGGAGTTCTACAACCAGAGCCAGGAGTTACAGACGAAGCTGGAGGACTGCAGGAACATGATCGCGGAGCTGCGCATAGAACTGAAGAAGGCCAACAGCAAGGTGTGCCACACCGAGCTGCTGCTCAGCCAGGTGTCTCAGAAGCTCTCAAATAGTGAGTCGGTCCAACAGCAGATGGAGTTCTTGAACAGGCAGCTGTTGGTTCTTGGGGAAGTCAACGAGCTGTATCTGGAGCAACTGCAGAACAAGCATTCAGACACCACGAAGGAAGTAGAAATGATGAAAACTGCATATCGGAAAGAACTAGAAAAAAACAGAAGCCATGTTCTCCAGCAGAATCAGAGGCTGGATACTGCTCAAAAACGGATTTTGGAACTGGAATCTCATCTAGCCAAGAAAGACCACCTTCTTTTGGAACAGAAAAAATATTTAGAGGATGTCAAACTCCAGGCAAGAGGACAGCTGCAGGCCGCAGAGAGCAGGTATGAAGCTCAGAAGAGGATCACCCAAGTGTTTGAATTGGAGATCTTAGATTTATACGGCAGGTTGGAGAAGGATGGCCTCCTGAAAAAACTTGAAGAAGAAAAAACAGAAGCAGCCGAAGCAGCGGAAGAAAGGCTCGACTGTTGTCGTGACGGCTGCTCAGATCCTGTGACAGGGCACAACAATGAAGAGGCATCTGGCCCTAACGGGGAGACCAAGCCCCCCAGGCCCGGAGGCAGCAGCAGCAGCAGCGGCGGCAGTGAGCTTTCTACCCCGGAGAAACCCCCAAACCCGAGGATGGGCCCGCTCAGCAGTCGCTGGGAGACTGCCGTGGGAGAGCCCACCGCGGGCATCCCTGTGACTGTCGGCTCACTTCCTAGTTCAAAAAGCTTCCTGGGCATGAAGGCTCGAGAGCTATTTCGTAATAAGAGTGAGAGCCAGTGCGATGAGGACAGCCTGACCAGCAGTAGCCTTTCTGAGACCCTAAAGACAGAGCTGGGCAAAGACTCGGGTGTGGAAGCCAAGCCCCCCCTGAACCTAGACGGCCCGCAGCCGCCTCCCCCGAAGCCAGACAGCGTGGGGCAGCTCCGTATCATGGACTACAATGAGGCACAGCACGAGCACAGCTAG

Related Sequences

bmy_05379T0 Protein

Length: 1092 aa      View alignments
>bmy_05379T0
MAQQANIGELLSMLDSPMLSVRDDVTAVFKENLNSDRGPMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNEYMGKAASRLSTLSLLGHVVRLQPSWKHKLSQAPLLPSLLKCLKMDTDVIVLTTGVLVLITMLPMIPQSGKQHLHDFFDIFGRLSSWCLKKPGKDLLLYLSCPTKWKRLETHDVVIECAKISLDPTEASYEDGYSVSHQISARFPHRLADVTASSYVDTQNSYGSATSTPHSTSRLMLLNTPGQLPQTLSSLSTRLLTEPPQATLWSPSVVCGMTTPPTSPGNVPPDLSHPYSKVFGTAGRKGTPLGTPATSPPPAPPCHSDDYVHISLPQAMATAPKKEERTDXARPCLHRQHHLPNDRGLEELPGSKGSVTLSDLPGFLGDLASEEDSIEKDKEEAAISKELSEITTADAEPLAPRGGFDSPFYRDSLPGCPRKTHSAVSSAQGTGANPEPLNSTLDRLGPDTPKQAFTPIDLPCGGAEESPAGDRERQASLESSILTPSPFKIPPQRGVGFGSGQPPPYDHLFEVALPKTARHFVSKKTEGLLKKAKGNTEEDCTPSASPMEVLDRLIQQGADAHSKELNRLSLPSKSVDWTHFGGSAPSDETRSLRNQLLLLHNQLLYERFKRQQHALRNRRLLRKVIRAAALEEHNAAMKDQLKLQEKDIQIWKVSLQKEQARYSQLQEQRDTVVTQLHSQIRQLQHDREEFYNQSQELQTKLEDCRNMIAELRIELKKANSKVCHTELLLSQVSQKLSNSESVQQQMEFLNRQLLVLGEVNELYLEQLQNKHSDTTKEVEMMKTAYRKELEKNRSHVLQQNQRLDTAQKRILELESHLAKKDHLLLEQKKYLEDVKLQARGQLQAAESRYEAQKRITQVFELEILDLYGRLEKDGLLKKLEEEKTEAAEAAEERLDCCRDGCSDPVTGHNNEEASGPNGETKPPRPGGSSSSSGGSELSTPEKPPNPRMGPLSSRWETAVGEPTAGIPVTVGSLPSSKSFLGMKARELFRNKSESQCDEDSLTSSSLSETLKTELGKDSGVEAKPPLNLDGPQPPPPKPDSVGQLRIMDYNEAQHEHS*