Part of scaffold_193 (Scaffold)

For more information consult the page for scaffold_193 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HTT ENSTTRG00000014476 (Bottlenosed dolphin)

Gene Details

huntingtin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013725, Bottlenosed dolphin)

Protein Percentage 92.73%
cDNA percentage 93.37%
Ka/Ks Ratio 0.3656 (Ka = 0.0333, Ks = 0.091)

HTT ENSBTAG00000001506 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001972, Cow)

Protein Percentage 91.06%
cDNA percentage 88.06%
Ka/Ks Ratio 0.10996 (Ka = 0.0479, Ks = 0.4359)

HTT  (Minke Whale)

Gene Details

huntingtin

External Links

Gene match (Identifier: BACU004138, Minke Whale)

Protein Percentage 96.93%
cDNA percentage 97.28%
Ka/Ks Ratio 0.38307 (Ka = 0.0197, Ks = 0.0514)

Genome Location

Sequence Coding sequence

Length: 5340 bp    Location:518219..425122   Strand:-
>bmy_05449
ATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTCCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCCGGACCGGCCGTGGCCGAGGAGCCGCTGCACCGACCAAAGAAAGAACTCTCAGCCACCAAGAAAGACCGTGTGAATCATTGTCTGACAATATGTGAAAACATAGTGGCACAGTCTCTCAGTGATGACGCAGAGTCAGATGTCAGGATGGTGGCTGACGAGTGCCTCAACAAAGTCATAAAAGCTTTGATGGATTCTAATCTTCCGAGGTTACAGTTAGAACTCTATAAGGAAATTAAAAAGAACGGCGCTCCTCGGAGCCTGCGCGCTGCCCTGTGGAGGTTTGCCGAGCTGGCTCACCTCGTTCGGCCTCAGAAATGCAGGCCTTACTTGGTAAACCTTTTGCCTTGCCTGACGCGCACAAGCAAGAGACCCGAAGAGTCTGTCCAGGAGACCTTGGCTGCAGCTGTCCCTAAGATTATGGCTTCTTTCGGCAATTTTGCAAACGACAATGAAATTAAGGTTCTGTTAAAGGCTTTCATAGCGAATCTGAAGTCCAGCTCTCCTACCGTGCGGCGGACAGCGGCCGGCTCGGCGGTGAGCATCTGCCAGCACTCCAGGAGGACGCAGTACTTTTACAGCTGGCTGCTCAGCGTGCTCTTAGGTTTGCTGGTTCCTGTGGAGGAGGAACACTCCACCCTTCTGATTCTCGGAGTGCTGCTCACATTGAGGTATTTGGTGCCCTTGCTGCAGCAGCAGGTCAAGGACACGAGCCTGAAAGGCAGCTTTGGGGTGACACGGAAAGAGATGGAGGTCTCTCCCTCGACGGAGCAGCTTGTCCAGGTGTACGAATTGACCTTGCATTATACTCAGCACCAAGACCACAATGTTGTGACTGGGGCCCTGGAACTCCTACAGCAGCTCCTCAGAACCCCTCCACCTGAGCTCCTGCGAGCGCTGACCACGGCGGGCGGCATCGGGCAGCTCACTGCCGCTAAGGATGAGCCCGGTTGCCGAAGTCGTAGCGGAAGCATCGTGGAGCTTATAGCTGGAGGGGGTTCTTCATGCAGCCCTGTCCTTTCAAGAAAACAAAAAGGGAAAGTGCTCTTTGGAGAAGCAGCAGCCTTGGAGGATGACTCTGAGTCAAGGTCAGACGGCAGCAGCCCCACCTTTGCAGCCTCAGTCAAGGGTGAGATTGGCGGTGAGCTGGCTGCCTCTTCTGGGGTCTCCACTCCTGGCTCTGCCAGCTCAGCTGCCGACTCTGTGGGTCACGACATCATCACTGAGCAGCCCCGGTCACAGCACACACTTCAGACGGACTCGGTGGATCTGACCGGCTGTGACTTGACGAGTGGTGCCACCGACGGGGACGAGGAGGACATCTTGAGCCACAGCTCCAGCCAGATGAGCGCCGTCCCGTCTGACCCTGCCATGGACCTGAACGATGGGACCCAGGCCTCCTCTCCCATCAGTGACAGCTCCCAGACCACCACCGAGGGGCCCGATTCAGCCGTGACCCCTTCCGACAGTTCTGAAATTGTGTTAGATGGTGCCGACAGCCAGTACCCAGGGATGCAGGCGGGGCAGCCCCAGGACGAGGACGAGGACGCTGCTGCAATTCTTCCTGATGAAGACGCGGAGGCTTTCAGAAACTCTTCCATTGCCCTTCAACAAGCACATTTGTTGAAAAGCATGGGCCACAGCAGGCAGCCCTCTGACAGCAGTGTAGATAAATTTGTCTCRAGAGATGAAGCTGCTGAACCAGGAGATCAAGAAAACAAGCCCTGCCGGATCAAAGGCGACATTGGCCAGTCCAGTGACGAAGATTCTGCTCCTCTTGTCCATTGCGTCCGCCTTCTGTCCGCTTCATTTTTGCTAACTGGGGAAAAAAACGCCTTGGTTCCGGATAGGGACGTGAGGGTCAGCGTGAAGGCACTGGCGCTCAGCTGTGTTGGAGCTGCTGTGGCCCTTCACCCTGAATCTTTCTTCGGCAGACTTTACAGAGCACCGCTTGACACCATGGAATACTCTGAGGAGCAGTACGTGTCAGACATCTTGAACTACATCGACCATGGGGACCCACAGGTCAGAGGAGCCACGGCTATCCTCTGTGGGACCCTTGTGTCCTCCATCCTCAGCAGGTCCCGCTTCCACGTGGGAGACTGGATGGGCACCGTCAGAACTCTGACAGGAAATACATTTTCTCTGGCGGACTGCATTCCCCTGCTGCAGAAAACTTTGAAGGACGAATCTTCTGTTACTTGCAAGTTGGCTTGTACAGCTGTGAGGCTCTGCGTCATGAGTCTCTGCAGCAGCAGCTACAGCGAGTGGGGGCTGCAGCTCCTCACCGACGTGCTGGCCCTGCGGAGCAGCTCCTACTGGCTGGTGAGGACGGAGCTTCTGGAGACTGTGGCAGAGATCGACTTCAGGTTGGTGAGCTTTTTGGAGGCAAAAGCAGAAAACCTACACAGAAGGGCCCATCATTATACAGGGCTTTTAAAACTGCAAGAACGAGTGCTCAATAACATTGTCATCTATTTGCTTGGGGATGAAGACCCCAGGGTGCGCCATGTTGCTGCAGCTTCGTTAATGAGGCTTGTCCCGAAGCTGTTTTATAAGTGCGACCAAGGACAGGCTGACGCAGTTGTGGCCATGGCGAGAGGTCAAAGCAGCGTTCACCTGAAGCCTCTCATGCACGAGGCGCAGCCTCCATCTCACTTCTCCGCCAGCACCATAACCAGAATATATAGAGGCTATAACCTACTACCAAGCATAACAGACGTCACTATGGAAAATAACCTTTCGAGAGTCATTGCAGCAGTTTCTCATGAGCTAATCACATCAACCACGAGGGCGCTCACATTTGGATGCTGTGAAGCTCTGTGTCTTCTTTCAACTGCCTTTCCAGTTTGCATTTGGAGTTTAGGTTGGCATTGTGGAGTGCCCCCACTGAGCGCCTCTGATGAGTCTAGAAAGAGCTGTACTGTGGGCATGGTCACGATGATCCTGACCCTGCTTTCATCAGCCTGGTTCCCACTGGATCTCTCAGCCCATCAAGATGCTTTGATTTTAGCCGGGAACTTGCTTGCAGCCAGTGCCCCCAGATCTCTGAGGAGTTCGTGGGCCTCCGAAGAAGAGGCCAGCCCTGCAGCCACCAAGCAGGAAGAGGTGTGGCCGGCTCTGGGTGACCGGACCCTGGTGCCCATGGTGGAGCAGCTCTTCTCCCACCTGCTGAAGGTGGTCAACATCTGTGCACACGTCCTGGATGATGTGGCTCCTGGACCAGCAATAAAGGCAGCCTTGCCGTCTCTAACAAACCCGCCTTCTCTGAGTCCAATCCGACGGAAGGGAAAAGAGAAGGAACCCGGAGAGCAGGTGTCTGTACCCGTGAGTCCCAAGAAAGGCGGTGAGGCCAGTCCAGCCTCTCGACCGTCTGAAACCTCAGGGCCTGTTGCAGCAACCAAGTCCTCGTCACTGGGGAGTTTCTRTCACCTTCCTTCTTACCTTAAATTGCACGATGTCCTGAAAGCTACACACGCAAACTACAAGGTCACCTTGGATCTTCAGAGCAACACCGAAAAGTTTGGGGCTTTTCTGCGCTCTGCCTTGGATGTTCTCTCTCAGATTCTAGAGTTGGCGACACTGCAGGACATCGGGAAGTGTGTTGAAGAGATCCTGGGGTACCTGAAATCCTGCTTCAGTCGAGAACCAGTGATGGCAACTGTTTGTGTCCAGCAGCTGTTGAAGACTCTCTTTGGGACAAACTTGGCCTCCCAGTTTGATGGCTTATCTTCCAACCCCAGCAAGTCTCAAGGCCGTGCTCAGCGCCTTGGCTCTTCCAGCCTGAGGCCGGGCTTGTACCACTACTGCTTCATGGCTCCGTACACCCACTTCACCCAGGCCTTAGCCGACGCCAGCCTAAGGAACATGGTGCAGGCAGAACAGGACCACGACACCTCAGGGTGGTTTGACGTACTCCAGAAAGTGTCTACCCAATTGAAGACAAACCTCACCAGTGTCGCAAAGAACCGCGCAGACAAGAATGCTATTCATAATCACATTCGTTTATTTGAGCCTCTTGTTATAAAAGCTTTAAAACAGTACACGACAACAACCTCTGTGCAGTTACAGAAGCAGGTTTTGGATTTGCTGGCACAGCTGGTTCAGTTACGGGTTAATTACTGCCTTCTGGATTCGGATCAGGTGTTTATTGGATTTGTGCTGAAGCAGTTTGAATACATTGAAGTAGGCCAGTTCAGGGAATCAGAGGCAATTATTCCGAACATCTTTTTCTTCCTGGTATTACTGTCTTATGAACGCTATCATTCAAAACAGATCATTGGAATTCCTAAAATCATCCAGCTCTGTGACGGCATCATGGCCAGTGGGAGGAAGGCTGTGACACACGCCATACCAGCCCTGCAGCCTGTAGTCCACGACCTCTTCGTTTTAAGAGGAACCAACAAAGCTGATGCAGGAAAAGAGCTTGAAACCCAGAAAGAGGTGGTGGTGTCAATGTTACTGAGACTCATCCAGTACCATCAGGTGTTGGAGATGTTCATCCTGGTCCTGCAGCAGTGCCACAAGGAGAGCGAGGACAAGTGGAAGCGGCTGTCTCGGCAGATAGCCGACATCGTCCTCCCGATGTTGGCCAGGCAACAGATGCACATTGATTCTCACGAAGCCCTTGGAGTGTTAAATACGTTATTTGAGATTTTGGCCCCTTCCTCCCTCCGTCCTGTGGACATGCTTTTACGGAGTATGTTCGTCACCCCAGATACCCTGGCATCTGTGACCACTGTTCAACTATGGATATCCGGAATCCTAGCCATTTTGAGGGTTCTGATTTCCCAGTCAACTGAAGATATTGTTCTTTCTCGTATTCAGGAGCTTTCCTTCTCTCCATATTTACTCTGCTGTCCGATAATTAATAGGTTGAGAGATGGGGACAGTAATTCAGTACTGGAAGACCACAGTGAAGGGAGACAAACAAAGAATTTGCCAGAAGAAACGTTCTCCAGGTTTCTGCTACAACTGGTTGGCATCCTTTTAGAGGACATTGTTACAAAACAGCTAAGAGTGGAAATGAGTGAACAGCAGCATACTTTCTACTGCCAAGAGCTAGGCACGCTGCTCATGTGTCTGATCCACATCTTCAAGTCTGGTAGCGGTTTGCCTCTTGATCTCATTACCAGAAATGCCTCTGCAAAGGCCACCTGTGGGCTTTCCCAGGTCCTCATCTTCCCGGACCCTGCAGCCCAATTCCGTGGACAGACCTCTGCTCGCTGA

Related Sequences

bmy_05449T0 Protein

Length: 1780 aa      View alignments
>bmy_05449T0
MATLEKLMKAFESLKSFQQQQQQQQQQQQPPPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKSSSPTVRRTAAGSAVSICQHSRRTQYFYSWLLSVLLGLLVPVEEEHSTLLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVTGALELLQQLLRTPPPELLRALTTAGGIGQLTAAKDEPGCRSRSGSIVELIAGGGSSCSPVLSRKQKGKVLFGEAAALEDDSESRSDGSSPTFAASVKGEIGGELAASSGVSTPGSASSAADSVGHDIITEQPRSQHTLQTDSVDLTGCDLTSGATDGDEEDILSHSSSQMSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYPGMQAGQPQDEDEDAAAILPDEDAEAFRNSSIALQQAHLLKSMGHSRQPSDSSVDKFVSRDEAAEPGDQENKPCRIKGDIGQSSDEDSAPLVHCVRLLSASFLLTGEKNALVPDRDVRVSVKALALSCVGAAVALHPESFFGRLYRAPLDTMEYSEEQYVSDILNYIDHGDPQVRGATAILCGTLVSSILSRSRFHVGDWMGTVRTLTGNTFSLADCIPLLQKTLKDESSVTCKLACTAVRLCVMSLCSSSYSEWGLQLLTDVLALRSSSYWLVRTELLETVAEIDFRLVSFLEAKAENLHRRAHHYTGLLKLQERVLNNIVIYLLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADAVVAMARGQSSVHLKPLMHEAQPPSHFSASTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMVTMILTLLSSAWFPLDLSAHQDALILAGNLLAASAPRSLRSSWASEEEASPAATKQEEVWPALGDRTLVPMVEQLFSHLLKVVNICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQVSVPVSPKKGGEASPASRPSETSGPVAATKSSSLGSFXHLPSYLKLHDVLKATHANYKVTLDLQSNTEKFGAFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDTSGWFDVLQKVSTQLKTNLTSVAKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPVVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKESEDKWKRLSRQIADIVLPMLARQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTLASVTTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLLCCPIINRLRDGDSNSVLEDHSEGRQTKNLPEETFSRFLLQLVGILLEDIVTKQLRVEMSEQQHTFYCQELGTLLMCLIHIFKSGSGLPLDLITRNASAKATCGLSQVLIFPDPAAQFRGQTSAR*