Part of scaffold_198 (Scaffold)

For more information consult the page for scaffold_198 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APOBEC1 ENSTTRG00000014015 (Bottlenosed dolphin)

Gene Details

apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013291, Bottlenosed dolphin)

Protein Percentage 69.77%
cDNA percentage 80.23%
Ka/Ks Ratio 1.15607 (Ka = 0.2424, Ks = 0.2097)

APOBEC1 ENSBTAG00000014683 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000019544, Cow)

Protein Percentage 60.51%
cDNA percentage 72.14%
Ka/Ks Ratio 0.61638 (Ka = 0.3179, Ks = 0.5157)

APOBEC1  (Minke Whale)

Gene Details

apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1

External Links

Gene match (Identifier: BACU017019, Minke Whale)

Protein Percentage 90.28%
cDNA percentage 93.06%
Ka/Ks Ratio 0.76068 (Ka = 0.0698, Ks = 0.0918)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 585 bp    Location:1267811..1263002   Strand:-
>bmy_05542
AGAAGAATTGAACCCTGGGAATTTGAAGTCTCCTTTGACCCCCGAGAACTCTGTAAAGAGGCCTGTCTGCTCTATGAAATCAAGTGGGGCAAGAGGCAGAAGGTCTGGCGACACTCGGGCAAGAACACCACCAAGCACGTTGAATGCAATTTTATAGAAAAAATTACTTCAGAAAGACATTTTCCCCCATCCGTCAGCTGCTGCATCACCTGGTTCTTGTCCTGGAGTCCCTGCTGGGAATGCTCCAAGGCTATTCGGGAATTTTTGAATCAACATCCTAGAGTGACCCTGGTTATTTACGTAGCACGGCTTTTCCAGCACATGGATCCGCAAAACCGGCAAGGACTCAGAGACCTGATTCACAGTGGTGTGACTATCCAGATTATGGGACCCCCAGGGTCTCCCTCCCTGTTTGAAGATTTCAAGAAGATGTCAGAATCAGCTGACCTGGTTCAGACTTATTCCTCAAAATTGCCATTACCGAATGATTCCACCCCATATCCTTTTAGGTACAGGGTTGATACAACTTCCTGTGACTTGGAGATGAATAGAATGATTTCTTGTGATATGCTGGTAACCAAAACA

Related Sequences

bmy_05542T0 Protein

Length: 195 aa      View alignments
>bmy_05542T0
RRIEPWEFEVSFDPRELCKEACLLYEIKWGKRQKVWRHSGKNTTKHVECNFIEKITSERHFPPSVSCCITWFLSWSPCWECSKAIREFLNQHPRVTLVIYVARLFQHMDPQNRQGLRDLIHSGVTIQIMGPPGSPSLFEDFKKMSESADLVQTYSSKLPLPNDSTPYPFRYRVDTTSCDLEMNRMISCDMLVTKT