Part of scaffold_198 (Scaffold)

For more information consult the page for scaffold_198 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NANOG ENSTTRG00000000753 (Bottlenosed dolphin)

Gene Details

Nanog homeobox

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000710, Bottlenosed dolphin)

Protein Percentage 67.87%
cDNA percentage 69.4%
Ka/Ks Ratio 0.67253 (Ka = 0.0244, Ks = 0.0363)

NANOG ENSBTAG00000020916 (Cow)

Gene Details

Homeobox protein NANOG

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027863, Cow)

Protein Percentage 86.33%
cDNA percentage 90.0%
Ka/Ks Ratio 0.30738 (Ka = 0.0733, Ks = 0.2383)

NANOG  (Minke Whale)

Gene Details

Nanog homeobox

External Links

Gene match (Identifier: BACU017024, Minke Whale)

Protein Percentage 98.94%
cDNA percentage 99.29%
Ka/Ks Ratio 0.35149 (Ka = 0.0049, Ks = 0.014)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 924 bp    Location:1423510..1427824   Strand:+
>bmy_05546
ATGAGTGTGGACCCAGCTTGTCCCCAAAGCCTGCGTGGCCCCGAAGCATCCAATTCTAGGGAATCTTCACCAATGCCTGAGATTTATGGGCCTGAAGAAAATTATGTGTCCTTGCAAATGTCATCTGCTGAGACCCACGACATGGAGACTGTCTCTCCTCTTCCTTCCTTCTCCATGGATCTGCTTATTCAGGACAGTCCTGATTCTTCCACAAGCCCCAGAGTAAAACTACTGGCCACGGCTGCAGACAAGAGCACAGAGAAGAAGGAAGAGAAGGTCCTGATCAAGAAACAGAAGACCAGAACCGTGTTCTCTCAGACGCAGCTGTGTGTGCTCAATGACAGATTTCAGAGGCAGAAATACCTCAGCCTCCAGCAAATGCAAGAGCTTTCCAACATCCTGAACCTTAGCTACAAACAGGTTAAGACCTGGTTCCAGAACCAGAGAATGAAATGTAAGAGGTGGCAGAAAAACAACTGGCCGAGGAATAGCAACACTGTGACTCAGGGCCCAGCAACTACAGAATACCCGGGCTTCTATTCCTACCACCAAGGATGCCTGGCGAACTCTTCCGGAAACCTGCCCATGTGGGGTAACCAGACCTGGAATAACCCAACTTGGAGCAACCAGAGCTGGAACAGTCAGTCCTGGAGCAACCACCCTTGGAACAATCAGACCTGGTGCCCCCAAGCCTGGAATAACCAGACTTGGAACAATCAATTCAACAACTATGTTGAGGAATTCCTGCAGCCCCAGATCCAGTTCCAGCAAAATTCTCCTGTCAGTGATTTGGAGGCCACCTTGGAAACTGCCGGGGAAAGCTATAACATAATACAGCAAACTGCTAAGTATTTCAATTCCCAACAGCAAATCATGGATTTATTCCCAAATTACTCTCTGAACATACAGCCTGAAGATTTGTAA

Related Sequences

bmy_05546T0 Protein

Length: 308 aa      View alignments
>bmy_05546T0
MSVDPACPQSLRGPEASNSRESSPMPEIYGPEENYVSLQMSSAETHDMETVSPLPSFSMDLLIQDSPDSSTSPRVKLLATAADKSTEKKEEKVLIKKQKTRTVFSQTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKCKRWQKNNWPRNSNTVTQGPATTEYPGFYSYHQGCLANSSGNLPMWGNQTWNNPTWSNQSWNSQSWSNHPWNNQTWCPQAWNNQTWNNQFNNYVEEFLQPQIQFQQNSPVSDLEATLETAGESYNIIQQTAKYFNSQQQIMDLFPNYSLNIQPEDL*