Sequence details bmy_05555 (Coding sequence)

Part of scaffold_198 (Scaffold)

For more information consult the page for scaffold_198 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLEC4E ENSTTRG00000014265 (Bottlenosed dolphin)

Gene Details

C-type lectin domain family 4, member E

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013518, Bottlenosed dolphin)

Protein Percentage 86.92%
cDNA percentage 92.31%
Ka/Ks Ratio 0.65176 (Ka = 0.0737, Ks = 0.1131)

CLEC4E ENSBTAG00000012185 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016163, Cow)

Protein Percentage 79.23%
cDNA percentage 86.41%
Ka/Ks Ratio 0.53885 (Ka = 0.1276, Ks = 0.2369)

CLEC4E  (Minke Whale)

Gene Details

C-type lectin domain family 4, member E

External Links

Gene match (Identifier: BACU003055, Minke Whale)

Protein Percentage 95.38%
cDNA percentage 97.44%
Ka/Ks Ratio 0.61674 (Ka = 0.0229, Ks = 0.0371)

Additional orthologs identified in other species via the OPTIC pipeline.

CLEC4E (Human)   Clec4e (Mouse)  

Genome Location

Sequence Coding sequence

Length: 393 bp    Location:1700508..1696214   Strand:-
Raw sequence 
>bmy_05555
ATGAACATTAACTGTGCCCCTTTCGTTACAGTGACATATCACACCTTTCAGCTCTGTGATGAGAAAAAGTTCCAGCCACCTGAGAATTTCACGGAGATCTCCTGCTATAATGATGGATTAGGTTCAGTCAAGAATTGCTGTCCATTGAACTGGGTACATTTTCAATCCAGCTGCTATTTCTTTTCTACTAACACCATGACCTGGTCAGCAAGCTCAAAAAACTGCTCGAGCATGGGAGCTCACCTGGTGGTTATCAACACGCAGGAGGAACAGGAATTCCTTTACAGTATGAAACCTAAAAGGAAAGAGTTTTATATTGGACTGACGGACCAGGTGACTGAGGGTCAGTGGCAATGGGTAGATGGTACACCTTTCACAGAGTCTCTGAGGTAA

Related Sequences

bmy_05555T0 Protein

Length: 131 aa      View alignments
>bmy_05555T0
MNINCAPFVTVTYHTFQLCDEKKFQPPENFTEISCYNDGLGSVKNCCPLNWVHFQSSCYFFSTNTMTWSASSKNCSSMGAHLVVINTQEEQEFLYSMKPKRKEFYIGLTDQVTEGQWQWVDGTPFTESLR*