Part of scaffold_199 (Scaffold)

For more information consult the page for scaffold_199 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CD164 ENSTTRG00000004181 (Bottlenosed dolphin)

Gene Details

CD164 molecule, sialomucin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003936, Bottlenosed dolphin)

Protein Percentage 91.46%
cDNA percentage 95.64%
Ka/Ks Ratio 1.14867 (Ka = 0.0481, Ks = 0.0419)

CD164 ENSBTAG00000017992 (Cow)

Gene Details

Sialomucin core protein 24

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023937, Cow)

Protein Percentage 79.59%
cDNA percentage 89.97%
Ka/Ks Ratio 1.56429 (Ka = 0.1284, Ks = 0.0821)

CD164  (Minke Whale)

Gene Details

CD164 molecule, sialomucin

External Links

Gene match (Identifier: BACU018857, Minke Whale)

Protein Percentage 83.06%
cDNA percentage 90.89%
Ka/Ks Ratio 1.24119 (Ka = 0.1069, Ks = 0.0862)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 600 bp    Location:802086..786948   Strand:-
>bmy_05567
ATGTCGGGGCTCTTCCGCCCGCTGCTTTTGGTCGCTGGCTGCCTGGCCACGCTCTGCGTGATGACCGCGGCTGAGGACACCACCCTGGCCCTGAACGAGACTGCACCCTCGGTTCTACCGAGCACCACCACGACAGCCCCGGTGCCGCCGCCGACGCTCCCGGCGGTCACCACTCTAGCACCAGAAATCTGTGAAAGCCGCAACAACTGTGTTTCCTGTTTTGATGCTAATGCTGCTAACACTACCTGCTTTTGGATAGAATGTAAAGGTAAAAGCTACTGTTCAGATAATTCAACAGTTAGTGATTGCAAGGTGGTGAACAGCACGGAATTCTGTACTGTGCCCACTGCCACAGCATTGCCAACCAATTCTACAGCTAAAACCACAACTCTGCCTTCCCCTTCTACAGCTTCCACCACAGCTACTACATCAGGTACAACTAATACCACTTTAACTCCGACTTCACAACCTGCGCGGAAGTCTACGTTTGATGCAGCCAGTTTCATTGGAGGAATTGTCCTTGTCTTGGGTGTGCAGGCTGTAATTTTCTTTCTCTATAAATTCTGCAAATCTAAAGAACGAAACTACCACACTCTGTAA

Related Sequences

bmy_05567T0 Protein

Length: 200 aa      View alignments
>bmy_05567T0
MSGLFRPLLLVAGCLATLCVMTAAEDTTLALNETAPSVLPSTTTTAPVPPPTLPAVTTLAPEICESRNNCVSCFDANAANTTCFWIECKGKSYCSDNSTVSDCKVVNSTEFCTVPTATALPTNSTAKTTTLPSPSTASTTATTSGTTNTTLTPTSQPARKSTFDAASFIGGIVLVLGVQAVIFFLYKFCKSKERNYHTL*