Sequence detailsbmy_05610 (Coding sequence)

Part of scaffold_209 (SequenceType object (1))

For more information consult the page for scaffold_209 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CSPG5ENSTTRG00000002301 (Bottlenosed dolphin)

Gene Details

chondroitin sulfate proteoglycan 5 (neuroglycan C)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000002156, Bottlenosed dolphin)

Protein Percentage 83.51%
cDNA percentage 85.22%
Ka/Ks Ratio 0.58275 (Ka = 0.0472, Ks = 0.0809)

BT.27313ENSBTAG00000002309 (Cow)

Gene Details

chondroitin sulfate proteoglycan 5 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000002979, Cow)

Protein Percentage 90.59%
cDNA percentage 91.02%
Ka/Ks Ratio 0.20843 (Ka = 0.0532, Ks = 0.2551)

Additional orthologs identified in other species via the OPTIC pipeline.

CSPG5 (Human)   Cspg5 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1908 bp    Location:538719..551851   Strand:+
Raw sequence 
>bmy_05610
CGAGCCGAGGGCGGGGGCCCGGGTCGGGGGCCGCCGCCGCTGCTGCTGCTTCTGGGGGCCACGCTGGTCCTCGCCACTGGGGCCGCACCGGTGCGTGAGGCGGGCAGAGCCGTCGAGGCAGACAGGCAGGTGAAGAGAGTCCTGGCATGGGAGCCGCGTGCTAACGACACGCGGGAGAAGGCCGGCCCACCAGCAGCTGGGGAAGATGAGACCTCTCGGACTGCGCCCGGCGGCGAGCATGCCGTGGTGGGCCCTGGGGTCGGGCCAGAGGAGGCTCTGGAGGCATCGGCGGCGGTGACGGACACAGCCTGGCTGGAGGCGGACAGCCCAGGCCTGGGCGGAGTGACGGCAGAGGCGGGCAGCGGCGACACCCAGGCCCTTCCAGCCACGCTCCCGGCTCCCGACGAGGCCCTCGGGCAGTCATCGACGGCCCCCGCCACCYCCGAGGCTACAGAGGCCAGCGGGCCACCCTCCCCCACCCCTGGCGACAAGCTGAGCCCAGACCCTGAACTCCCCAAGGAGAGCCCCTTGGAGGTTTGGCTGAACCTGGGAGGCAGCACACCTGACCCTCATGGGCCAGAGCCCACGTACCCCTTTCAGGGCACACTGGAGCCCCACACGGCGTCAGATATAATTGACATCGACTACTTCGAAGGATTGGATGGTGAGGGCCGTGGCGCCGACCTGGGGAGCTTCCCCGGGTCTCCAGGTACCTCAGAGCACCACCCTGATCCTGGGGGAGAGACCCCTTCCTGGAGCCTGCTTGACTTATACGATGACTTCACCCCGTTTGATGAGTCTGATTTCTACCCTACCACATCCTTCTATGATGATTTGGATGAAGAAGAGGAGGAAGAGGAGGATGACAAGGACGCAGGAGGAGGCAGAGACCTGGAAGATGAAAATGACCTTCTAATGCCCACTGAGAAACCTGGTCTGGGGCCCGGGACAGGCCAGCCCACTGGTCGGTGGCATGCTGTCCCTCCACAGCATACTCTGGGGATGGTCCCCGGCAGCAGCATCGCCCTCAGGCCCCGCCCAGGAGAGCCAGGCAGGGACCTGGCCCCAAGCGAGAATGGCACTGAGTGCCGCAGTGGCTTTGTGCGACATAACGGCTCCTGCCGGTCAGTGTGCGACCTCTTCCCAAGTTACTGTCACAATGGCGGCCAGTGCTACCTGGTGGAGAACATAGGGGCCTTCTGCAGGTGCAACACGCAGGACTACATCTGGCACAAGGGGATGCGCTGCGAGTCCATCATCACTGACTTCCAGGTGATGTGTGTGGCCGTAGGCTCGGCCGCCCTTGTGCTGCTCCTGCTCTTCATGATGACGGTGTTCTTCGCCAAGAAGCTCTACCTGCTCAAGACAGAGAACACCAAGCTGCGCAGGACCAGCAAATTCCGGACCCCATCTGAGCTCCACAATGATAACTTCTCCCTCTCCACCATTGCCGAGGGCTCTCACCCAAATGCTCCAGCCCCTGGCCACATCTCTGGTCCACTTCAGAGTGTGGAGCCACTCTTCAGAGCTCTGAGGATCAGGATAGGGCAGGCAGTTGGGGCCGTGAAAGTCCCAACAGACCATTTTCTAAAGACACTGGCCCAGTGTGTTATCTGGACCAGACTAACCAGTCAAATACTGGGTACTGTCAGAATTTCAGAAATTAAGCAGAAACCATCCAAGCCGCAAATCATATCAGATCCAAACGCAAGAATTCTGCACATGACACAGGCTCCATACCTCCAGGATGATTCTAGTGCTCCCCATAAAATCCAGGAAGCTCTCAAGTCCTGCCTGAAAGAGGAGGAGCCATTTAACATTCAGAACTCCATGTCGCCCAAACTCGAGGGTGGCAAAGGTGACCAGGCCGACTTGGAGGTGAATTGTCTTCAGAACAACTTAACCTAA

Related Sequences

bmy_05610T0 SequenceType object (3)

Length: 636 aa      View alignments
>bmy_05610T0
RAEGGGPGRGPPPLLLLLGATLVLATGAAPVREAGRAVEADRQVKRVLAWEPRANDTREKAGPPAAGEDETSRTAPGGEHAVVGPGVGPEEALEASAAVTDTAWLEADSPGLGGVTAEAGSGDTQALPATLPAPDEALGQSSTAPATXEATEASGPPSPTPGDKLSPDPELPKESPLEVWLNLGGSTPDPHGPEPTYPFQGTLEPHTASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSEHHPDPGGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAGGGRDLEDENDLLMPTEKPGLGPGTGQPTGRWHAVPPQHTLGMVPGSSIALRPRPGEPGRDLAPSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTSKFRTPSELHNDNFSLSTIAEGSHPNAPAPGHISGPLQSVEPLFRALRIRIGQAVGAVKVPTDHFLKTLAQCVIWTRLTSQILGTVRISEIKQKPSKPQIISDPNARILHMTQAPYLQDDSSAPHKIQEALKSCLKEEEPFNIQNSMSPKLEGGKGDQADLEVNCLQNNLT*