Part of scaffold_207 (Scaffold)

For more information consult the page for scaffold_207 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRAFD1 ENSTTRG00000010802 (Bottlenosed dolphin)

Gene Details

TRAF-type zinc finger domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010242, Bottlenosed dolphin)

Protein Percentage 95.88%
cDNA percentage 96.96%
Ka/Ks Ratio 0.49474 (Ka = 0.0134, Ks = 0.027)

TRAFD1 ENSBTAG00000008761 (Cow)

Gene Details

TRAF-type zinc finger domain-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011542, Cow)

Protein Percentage 74.48%
cDNA percentage 79.31%
Ka/Ks Ratio 0.41045 (Ka = 0.1895, Ks = 0.4617)

TRAFD1  (Minke Whale)

Gene Details

TRAF-type zinc finger domain containing 1

External Links

Gene match (Identifier: BACU003448, Minke Whale)

Protein Percentage 92.05%
cDNA percentage 94.17%
Ka/Ks Ratio 0.78098 (Ka = 0.0574, Ks = 0.0736)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1926 bp    Location:446312..427567   Strand:-
>bmy_05723
TGTGCATGGGTTGGGACTTCCAGGGACACGCCCCCGTGGAGCTCTGAGGAGCCAATCGGAGCGTGGAAGGCGGGGCTCTGGGAGCGACAACGGTGCTATCCAATGGTCAGAGAGTCTGGGCCACCCCTGGCCAATGGGCGCGCTCCTCCAAGACGGTCGGAAGTGGAACAGCTAAAGATGGCTGAATTTCTGAATGGCCAGGACACTCGACTGTGTGACAACTGCAAAAAAGAAATTCCTGTGTTTAACTTTACCATCCATGAGATCCACTGTCAAAGGAACATTGGTATGTGTCCTATCTGCAAGGAACCATTTCCCAAATCTGACATGGAGACTCACATGGCTACAGAACACTGTCAGGTGACCTGCAAATGTAACAAGAAGTTGGAGAAGAGGCAGTTAAAGAAGCATGAGGAGACTGAGTGTCCTCTACGACTTGCCCTTTGCCAGCACTGTGATTTGGAACTTTCTGTTCTCAAACTGAAAGACCATGAAGATTACTGTGGTGCCCGGACAGAGTTATGTGGCCACTGTGGGCGCAATGTCCTGGTGAAAGATCTGAAGACTCACCCTGAAGTTTGTGGGAGAGATGTGGAGGAAAAGAGAGATGAGGTTGCCATGCCACCTAATGCATATGATGATTCTTGGGGTCAAGATGGTATCTGGATTGCATCCCAACTCAGACAAATTGAGGCTCTGGACCCACGCATGAGGCTCCCTCGAAGGTCCCTGAGAGCCTTTGAATCAGACCTTTTCCAAAGTAGAACCACCAACCAAAGGAGCTTGACAGCCCAGTTTCCAATTCAGAATAATCTATTGGAAGAACAAGAAAGGCAGGAAAGGAATAGAAGCCGACAGACCCTCAAAGAGGGTGGTGAAGACAGTGCAAACTTGGATTTCATGTTGGCCCTAAGTCTGCAAAATGAAGGCCAGGCCCCCAACTTGGCAGAGCAGGACTTCTGGAGGGTCATATGTGAGGCAGACCAGTCCCATGAAGGTCCTGGTGCTCTGAATGACATAAGGGGTGCAGCTGATGAGACCATGTTGCCTTGTGAATTTTGTGAGGAGCTCTACCCAGAGGAACTGCTGATTGACCATCAGACAAGTTGTAACCCTTCATGTGCCTTACCTCCGATCAGTGTGGGCAATGCTTCTCCCAAAGGGGTGGAGGACCCTGATGTCACCTTCCAGAAGTTGATGCAGCAGGCTGCAAGTAACCAGTTAGACTCCTTGATGGGCCTGAGCAGTTCGCCTCCTGTGGAGGACAGCATCATCATCCCATGTGAATTCTGTGGGGTCCAGCTGGAAGAGGAGGTGCTGTTCCATCACCAGGACCAGTGTGACCAACGCCCAGCTACAGCAAACAACCACATGTCGGAGGGGATTCCTAGTCAGGATCTCCAGCCTCGACAGACCTCACCAGAGCTGCCCAAGAGGCGTGTCAGACACCAGGGAGACCTGTCTTCTGGTTACATGGATGATATCAAGCAGGAAATGGCTAAAGGGCCCACCTATCCTCTCCCTGCCAGCAGACCCACTAACAATATGACGGCTACTTCTAACCGCCTGTCAACATCCACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCCCTCCTCGCGCTCTGAAGCTCAACAACTTAGACAGCCAGGGCATCCAGGGGCGCAGTCGAAACAGCCATAATGGGGCCCTGGCTCCTGGGCACGTTCCAGTGGTTCACTCCGCTCGAAGTCTCTACCCAGAAAACCTTGTGCCCTCTTTCCCCTGTGGGCCTTCAGGGAGATACGGAGCAAGTGGCAGGAGTGAAGGTGGCAGGAACCCCCGGGTCACCCCCACGACTGCCAGCTACCGCAGCAGAACTGCAAAGGCAAAACCCCCCAAGCAGCAGGGAGCTGGGGATGCAGAGGAGGAAGAGGAGGAGGAGTAA

Related Sequences

bmy_05723T0 Protein

Length: 642 aa      View alignments
>bmy_05723T0
CAWVGTSRDTPPWSSEEPIGAWKAGLWERQRCYPMVRESGPPLANGRAPPRRSEVEQLKMAEFLNGQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMATEHCQVTCKCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGHCGRNVLVKDLKTHPEVCGRDVEEKRDEVAMPPNAYDDSWGQDGIWIASQLRQIEALDPRMRLPRRSLRAFESDLFQSRTTNQRSLTAQFPIQNNLLEEQERQERNRSRQTLKEGGEDSANLDFMLALSLQNEGQAPNLAEQDFWRVICEADQSHEGPGALNDIRGAADETMLPCEFCEELYPEELLIDHQTSCNPSCALPPISVGNASPKGVEDPDVTFQKLMQQAASNQLDSLMGLSSSPPVEDSIIIPCEFCGVQLEEEVLFHHQDQCDQRPATANNHMSEGIPSQDLQPRQTSPELPKRRVRHQGDLSSGYMDDIKQEMAKGPTYPLPASRPTNNMTATSNRLSTSTSGPRPGCQPSPPRALKLNNLDSQGIQGRSRNSHNGALAPGHVPVVHSARSLYPENLVPSFPCGPSGRYGASGRSEGGRNPRVTPTTASYRSRTAKAKPPKQQGAGDAEEEEEEE*