Part of scaffold_212 (Scaffold)

For more information consult the page for scaffold_212 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPH ENSTTRG00000004545 (Bottlenosed dolphin)

Gene Details

peripherin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004283, Bottlenosed dolphin)

Protein Percentage 99.33%
cDNA percentage 99.03%
Ka/Ks Ratio 0.04391 (Ka = 0.0026, Ks = 0.0591)

PRPH ENSBTAG00000017864 (Cow)

Gene Details

Peripherin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023744, Cow)

Protein Percentage 97.32%
cDNA percentage 95.91%
Ka/Ks Ratio 0.03686 (Ka = 0.0106, Ks = 0.2869)

PRPH  (Minke Whale)

Gene Details

peripherin

External Links

Gene match (Identifier: BACU007996, Minke Whale)

Protein Percentage 99.38%
cDNA percentage 99.52%
Ka/Ks Ratio 0.12301 (Ka = 0.0024, Ks = 0.0197)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2358 bp    Location:721544..716720   Strand:-
>bmy_05785
ATGGGGCTTCAATGGCAGTTGGGGCTCAGAGCCCAGGGCTGCAGCAGAAAGCACCTAGGCTTCCCCAGTCCCCTCCTCACACCTATCAAGCCCCCTACCCTAACCCAGGCAGGACCCTCCCCTCCCCACTTCCAAGAGTTAGTGGCGACCCGCCCTGGTTTATCCATCCCACCCCTCTCTCCCATCCTCCCTCTTCCCATTCCCCTGGCAACCAAACCAGATTCATCAAGGAGAAGGACCTGGCAGCTGTTCAGGGAGAGACTAATAGCCCAGAAGGAAGGAGGGGCCTGGAGAGGAGAGGAAGGCAAAGGCGGTAGGGATGTGAGCGTGAGGGCGTTGGCCCATCTCAGAGGACACACAAAGGCGGGGAGGCTCCTCTGCCCTGCAGTGCTGAGGGGATGGCCAGCCAGGGAGCCGCCCTCCTCATCCCCTCAGCCAGAGGTGCAGCCCGGAGTCCCAGACCTGTTTCCCCAGATGCCCAGCTCTTGTCCTCAGGGCCAATCCTACGCGGACCTGTCCTTACTGGAGAGCCCTGGAGTCCGCAGCGGCAGCAGCCCCTTAGCTCCTGACAAGCTCAACAGGCCTCAGCACCTCGACTCCTGCAGACCATCCAAGCTGCCTCTGTCCACTCCTGGGCAGCCTGTGCCTGCGTTCTGGAAGCCGTTTGACATGCAAAGGCCAGACATCAGCCTCCCTGCTAACTCTGGGGTGGGGGAGGCCCCGCTAATCGCTGGGTACCTGCAGCTCCTCAGTACTGGAAACCGGTTCCTGCCACAACTGGGGGAATCAAGTAGGCAGGGCGCCGGCAACCAGGGAGGGAGGGCGCGGCGCTCCCTCTGCACCGCAGGGGTGGGGCGTCCCCCACCCCACATAGCCCCACCGTCAGGCCAGTGGGAGGAGCAGCCCATGCCCCCACGAGCCCGCAGGGCTATAAAGCCGCCTCGCAGCGGTTTGCGGCTCCTTCCCAGCGCCCGGACAAGCTCTGCCAGCGGTGACTGCCCATCCTCGGCCGCCATGAGCCACCCGTCGGGCCTCCGGTCCGGAGTCAGTTCCACCTACTACCGCCGCACCTTCGGGCCACCGCCCTCGCTGTCCCCGGGGGCCTTCTCCTACTCTTCCAGCTCCCGCTTCTCGAGCAGCCGCCTGCTGGGCTCGGCGTCCCCCGGCTCCTCCGTGCGCCTGGGCAGCTTCCGCAGTCCCCGGGCGGGCGCGGGCGCCCTCCTGCGCCTGCCCTCGGAGCGCCTCGACTTCTCCATGGCCGAGGCCCTCAACCAGGAGTTCCTGGCCACGCGCAGCAACGAGAAGCAGGAGCTGCAGGAGCTCAACGACCGCTTCGCCAACTTCATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAACGCGGCCTTGCGCGGGGAGCTGAGCCAGGCCCGGGGCCAGGAGCCGGCGCGCACCGACCAGCTGTGCCAGCAGGAGCTGCGCGAGCTGCGGAGGGAGCTAGAGCTGCTGGGCCGCGAGCGCGACCGGGTGCAGGTGGAGCGCGACGGGCTGGCGGAGGACCTGGCGGCGCTCAAGCAGAGGTTGGAGGAGGAGACTCGCAAGCGCGAGGATGCGGAGCACAGCCTCGTGCTTTTCCGTAAGGACGTGGACGACGCCACCCTGTCCCGCCTGGAGCTAGAGCGCAAGATTGAGTCTCTGATGGATGAGATTGAGTTCCTCAAGAAGCTGCACGAGGAGGAGCTGAGAGACCTGCAGATGAGCGTGGAGAGCCAGCAGGTGCAGCAGGTCGAGGTGGAGGCGACCGTGAAGCCCGAGCTGACGGCGGCGCTGAGGGACATCCGTGCCCAGTACGAGAGCATCGCGGCGAAGAACCTGCAGGAAGCAGAAGAGTGGTACAAGTCCAAGTACGCGGACCTGTCCGACGCCGCCAACCGGAACCACGAGGCCCTGCGCCAGGCCAAGCAGGAGATGAACGAGTCGCGACGCCAGATCCAGAGCCTGACGTGCGAGGTGGACGGGCTTCGCGGCACGAACGAGGCGCTGCTCAGACAGCTGCGGGAGCTGGAGGAGCAGTTTGCCCTGGAAGCCGGCGGGTACCAGGCGGGCACCGCACGGCTCGAGGAGGAGCTGCGGCAGCTAAAGGAGGAGATGGCGCGACACCTGCGGGAGTACCAGGAGCTCCTCAACGTCAAGATGGCCCTGGACATCGAGATCGCCACCTACCGGAAGCTACTTGAGGGCGAGGAGAGCCGGATCTCCGTGCCAGTCCATTCCTTTGCATCCTTAAGTATAAAGACGACTGTGCCTGAGGTGGAGCCTCCCCAGGAGAGCCACAGCCGGAAGATGGTTCTGATCAAGACCATTGAGACCCGGGATGGGGAG

Related Sequences

bmy_05785T0 Protein

Length: 786 aa      View alignments
>bmy_05785T0
MGLQWQLGLRAQGCSRKHLGFPSPLLTPIKPPTLTQAGPSPPHFQELVATRPGLSIPPLSPILPLPIPLATKPDSSRRRTWQLFRERLIAQKEGGAWRGEEGKGGRDVSVRALAHLRGHTKAGRLLCPAVLRGWPAREPPSSSPQPEVQPGVPDLFPQMPSSCPQGQSYADLSLLESPGVRSGSSPLAPDKLNRPQHLDSCRPSKLPLSTPGQPVPAFWKPFDMQRPDISLPANSGVGEAPLIAGYLQLLSTGNRFLPQLGESSRQGAGNQGGRARRSLCTAGVGRPPPHIAPPSGQWEEQPMPPRARRAIKPPRSGLRLLPSARTSSASGDCPSSAAMSHPSGLRSGVSSTYYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSASPGSSVRLGSFRSPRAGAGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARTDQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHSLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGTARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQESHSRKMVLIKTIETRDGE