Part of scaffold_216 (Scaffold)

For more information consult the page for scaffold_216 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP4 ENSTTRG00000017365 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 4 (proto-oncogene)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016457, Bottlenosed dolphin)

Protein Percentage 99.18%
cDNA percentage 98.68%
Ka/Ks Ratio 0.11802 (Ka = 0.0041, Ks = 0.0344)

USP4 ENSBTAG00000011899 (Cow)

Gene Details

Ubiquitin carboxyl-terminal hydrolase 4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015787, Cow)

Protein Percentage 95.08%
cDNA percentage 93.08%
Ka/Ks Ratio 0.10639 (Ka = 0.0239, Ks = 0.225)

USP4  (Minke Whale)

Gene Details

ubiquitin specific peptidase 4 (proto-oncogene)

External Links

Gene match (Identifier: BACU002401, Minke Whale)

Protein Percentage 94.4%
cDNA percentage 94.9%
Ka/Ks Ratio 0.4579 (Ka = 0.0425, Ks = 0.0928)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2199 bp    Location:809724..785364   Strand:-
>bmy_06004
AGATCAAGCACTGCGCCTAGCAGAAATTTTACTACCTCTCCAACATCATCAGCAAGTCCCTATTCCTCAGTATCTGCCTCTCCCATTTCAAATGGTGATAGCACTAACACCTCTGGGATGCACAGTTCCGGTATCAGCAGGGGTGGATCTGGCTTCTCTGCTTCGTATAATTGTCAGGAGTCCCCATCAACTCATGTACAACCTGGGCTCTGTGGACTTGGAAACCTGGGGAACACCTGCTTCATGAACTCTGCCTTGCAGTGCTTAAGCAACACTGCACCACTGACTGACTACTTTCTCAAAGATGAGTATGAGGCTGAAATCAACAGGGACAACCCTCTGGGAATGAAAGGGGAAATTGCAGAGGCCTATGCAGAGCTCATTAAGCAGATGTGGTCTGGAAGGGATGCTCATGTGGCACCTCGCATGTTCAAAACTCAGGTGGGACGTTTTGCCCCTCAGTTTTCTGGCTACCAACAACAAGACTCTCAGGAGCTGTTAGCCTTTCTTCTAGACGGATTGCACGAAGATCTGAACCGAGTGAAGAAAAAACCGTACCTGGAGCTGAAGGATGCCAATGGGCGGCCAGATGCGGTAGTGGCAAAGGAAGCCTGGGAGAATCATAGGTTGAGGAATGACTCTGTGATTGTGGACACGTTCCATGGCCTCTTCAAATCTACCTTGGTTTGCCCAGAATGTGCTAAGGTTTCTGTGACCTTTGACCCATTTTGCTATTTAACTCTCCCGCTGCCCTTGAAGAAAGATCGAGTTATGGAGATCTTCCTGGTTCCCGCTGACCCTCGCTGCAGACCTACCCAGTACCGTGTGATTGTGCCGCTGATGGGGGCCGTGTCTGACCTGTGTGAGGCTCTCTCCAGGCTGTCTGGCATTGCTGCGGAAAACATGGTGGTCACAGATGTGTATAATCACCGGTTCCACAAAATTTTCCAAATGGATGAAGGTTTAAACCACATCATGCCTCGGGATGACATTTTCGTGTACGAGGTCTGCAGCACCTCCACAGACGGCTCTGAATGTGTCACGCTTCCAGTGTACTTCAGGGAAAGGAAATCCAGGCCGTCGAGCACTTCCACTGGGGCAGTGCTATATGGGCAGCCACTGCTGGTTTCTGTCCCCAAGCACAAGCTCACCCTCGAGTCTTTGTACCAGGCTGTTTGTGAGCGTATCAGCCGCTATATAAAACAACCTTTGCCTGATGAGTCTGGCAGCTCGCCCTTGGAGCTGGGGGCCTGCAATGGCTCCAGGGGCAGCTGTGAAGGAGAAGACGAGGAAGAAATGGAGCATCAGGAAGAAGGCAGAGAGCAGCTTTCAGAAACAGAGGACAGTGGGGAGGATGAGCTGGGAAGTGACCATGGCGAGACCACCCAAAAGAAGCTCAAAAGCCGGCCCTGCCCAAAAAGGCTTTTTACCTTCTGCCTTGTGAACTCCTATGGCACAGCCGACCTAAATTCCCTTGCAGCTGATGGGAAACTGCTTAAACTCAACTCTCGATCCACACTAGCCATCGATTGGGATAGTGAGACCCGGAGCCGTTATTATGATGAGCAGGAATCTGAGACCTACGAGAAGCACGTCAGCATGTTGCAGCCTCAGAAGAAAAAGAAGACAGCAGTGGCCCTGAGAGACTGCATCGAGCTCTTCACTACCATGGAGACCCTTGGGGAGCATGACCCCTGGTACTGTCCCAACTGTAAGAAGCATCAGCAGGCCACAAAGAAGTTTGACCTGTGGTCCTTGCCGAAGATTCTGGTGGTCCACCTCAAACGTTTCTCCTACAATAGATACTGGAGGGACAAGCTTGATACAGTTGTGGAATTCCCAGTCAGAGCTCTGAACATGTCTGAGTTTGTCTGTGACCTGTCAGCAAGGCCTTATGTGTACGACCTCATTGCCGTGTCCAATCATTATGGAGCCATGGGGGTTGGCCACTACACTGCGTACGCGAAGAACAAACTGAACGGGAAATGGTATTACTTTGATGATAGCAGTGTGTCCCTGGCCTCCGAGGATCAAATAGTGACGAAAGCAGCTTATGTGCTGTTTTACCAGCGTCGAGATGATGAGTTGTACAAGACGACTTCACTCAGTTTTCCTGGATCCTTTGATGGAGGGACGAGACCAGGCAGCTTACAGCAGGGCATGGGGGATGATGAGACTTGCAGCATGGACACCAACTGA

Related Sequences

bmy_06004T0 Protein

Length: 733 aa      View alignments
>bmy_06004T0
RSSTAPSRNFTTSPTSSASPYSSVSASPISNGDSTNTSGMHSSGISRGGSGFSASYNCQESPSTHVQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPADPRCRPTQYRVIVPLMGAVSDLCEALSRLSGIAAENMVVTDVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSTDGSECVTLPVYFRERKSRPSSTSTGAVLYGQPLLVSVPKHKLTLESLYQAVCERISRYIKQPLPDESGSSPLELGACNGSRGSCEGEDEEEMEHQEEGREQLSETEDSGEDELGSDHGETTQKKLKSRPCPKRLFTFCLVNSYGTADLNSLAADGKLLKLNSRSTLAIDWDSETRSRYYDEQESETYEKHVSMLQPQKKKKTAVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDELYKTTSLSFPGSFDGGTRPGSLQQGMGDDETCSMDTN*