Sequence details bmy_06055 (Coding sequence)

Part of scaffold_224 (Scaffold)

For more information consult the page for scaffold_224 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLSTN1 ENSTTRG00000003042 (Bottlenosed dolphin)

Gene Details

calsyntenin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002857, Bottlenosed dolphin)

Protein Percentage 89.73%
cDNA percentage 89.25%
Ka/Ks Ratio 0.13178 (Ka = 0.0179, Ks = 0.136)

CLSTN1 ENSBTAG00000011823 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000043064, Cow)

Protein Percentage 93.79%
cDNA percentage 90.6%
Ka/Ks Ratio 0.0779 (Ka = 0.0324, Ks = 0.4155)

CLSTN1  (Minke Whale)

Gene Details

calsyntenin 1

External Links

Gene match (Identifier: BACU002998, Minke Whale)

Protein Percentage 97.66%
cDNA percentage 97.77%
Ka/Ks Ratio 0.19498 (Ka = 0.0121, Ks = 0.0619)

Additional orthologs identified in other species via the OPTIC pipeline.

CLSTN1 (Human)   Clstn1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2757 bp    Location:633920..608460   Strand:-
Raw sequence 
>bmy_06055
ATGAAGAGAAAAATCCTCATGACACCTGAGGAGAGTTTTGAGGTGACAGTCACCAAAGAAGGTGAGATTTGTGGATTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCAGTAGTGGTGGATAAATCCACTGGCGAGGGAATCATTCGCTCAAAAGAGAAACTGGACTGTGAACTCCAGAAAGACTACACATTCACCATCCAGGCCTACGACTGCGGCAAGGGGCCTGATGGGGCCAAYGTGAAGAAGTCTCATAAAGCAACTGTCCATATTCAGGTGAACGACGTGAACGAATATGCACCTGTATTCAAGGAGAAGTCCTACAAAGCCACGGTGGTAGAGGGGAAGCAGTATGACAGCGTCCTGAGGGTGGAGGCGGTGGACGCAGACTGCTCGCCCCAGTTCAGCCAGATTTGCAGCTATGAAATTGTCACCCCGGATGTGCCATTCGCTGTCGACAAAGATGGTTATATAAAGAACACAGAGAAGCTGAACTACAGGAAAGAACAGCAGTACAAGCTGACAGTCACGGCTTACGACTGCGGGAAGAAGAGGGCAACAGAAGATGTTTTGGTGAAGATCAGCATCAAGCCCACCTGCACCCCTGGGTGGCAAGGATGGAACAACAGGGTCGAGTACGAGCCTGGCACYGGTGCTTTGGCGCTCTTCCCAAACGTCCACCTGGAGACATGTGACGAATCGGTGGCCTCAGTGCAGGTGACGGTGGAGCTGGAGACCAGCCACATAGGGAAGGGCTGTGACCGCGACACCTACTCCGAGAAGTCCCTTCACCGGCTCTGTGGCGCTGCGTCTGGCACAGCTGAGCTGCTCCCTTCCCCGGGCGGCTCCTTGAACTGGACCATCGGCCTCCCCACGGACAATGGCCACGACAGTGACCAGGTCTTCGAGTTCAATGGCACTCAAGGGGTTAGGGTCCCAGATGGCGTCGTTTCCGTCAACCCCAAGGAGCCTTTTACGATCTCTGTGTGGATGAGGCACGGGCCGTTTGGCAGGAAGAAGGAGACGGTCCTTTGCAGCTCAGACAAAACAGATATGAACCGACACCATTATTCACTCTATGTCCACGGCTGCCGGCTTATTTTCCTCCTCCGTCAGGATCCTTCAGAAGAGAAGAAATACAAACCTGCAGAATTCCACTGGAAGTTGAATCAGGTCTGTGACGAGGAATGGCATCACTATGTCCTCAACGTGGAAATCCCCAACGTGACTCTTTATGTGGACGGCGTCTCTCACGAGCCCTTCTCTGTGACCGAAGACTACCCGCTTCATGCATCCAAGATCGAAACCCAGCTCATGGTTGGAGCTTGCTGGCAAGAGTATTCAGGAGTTGAAAATGACAATGAAACTGAGCCTGTGCCTGTGGCCTCTGCAGGTGGTGACCTGCACATGACTCAGTTTTTCCGAGGTAATCTGGCTGGCCTGACGATCCGTTCCGGGAAACTCGCAGATAAGAAAGTGATTGACTGTCTGTATACCTGCAAAGAGGGGCTAGACCTGCACGTCCCCGAAGACAGCGGCAGCGGTGTCAAGATCCAAGCCAACCCCAGTCAGTCAGTGTTGACCTTGGAGGGAGAGGATGTAGGGGAGTTGGATAAGGCCATGCAGCACATTTCCTACCTGAATTCACGACAGTTCCCCACACCCGGGATCCGAAGACTCAAAATCACCAGCGTGGTCAAGTGTTTTAATGAGGCCACCTGCCTCTCAGTCCCCCCGTTGGATGGCTACGTGATGGTTTTGCAGCCGGAAGAGCCCAAGATCAGTCTGAGTGGCATCCACCATTTTGCTCGAGCGGCTTCCGAATTTGAAAGTTCGGAGGGGGTTTTCCTTTTCCCCGAGCTTCGGATCATCAGCACCATCACGAGAGAGGTGGAGCCCGAAGGAGAAGGGGACGAGGACCCCACAGTTCAAGAGTCACTGGTGTCGGAGGAGATTGTCCACGACCTAGACACCTGCGAGGTCACGGTGGAGGGAGAGGAACTGAACCGAGAGCAGGAGAGCCTAGAAGTGGACGCGGGCCGCCTGCAGCAGAAGGGCATCGAAGTGAGCAGCTCTGACCTGGGCGTGGTCTTCACAGGTGTCGACACCATGGCCAGCTACGAGGAGGTCTTGCACCTCCTGCGCTACCGGAACTGGCACACCAGGTCCTTGCTTGACCGGAAGTTCAAGCTTGTGTGCTCCGAGCTGAATGGTCGCTACGTCAGCAACGAGTTCCAGGTGGAGGTGAACGTCATCCACACGGCCAACCCCGTGGAGCACGCCAGCCACATGGCCGCGCAGCCGCAGTTCGTCCACCCCGAACACCGCTCCTTCATTGACCTCTCAGGTCACAACCTGGCCAACCCCCACCCGTTCGCAGTCGTCCCCAGCACCGCGACCGTCGTCATCGTGGTGTGTGTCAGCTTCCTGGTTTTCATGATCATCCTGGGAGTGTTCCGGATCCGGGCTGCTCACCAGAGAACCATGCGGGACCAGGACAGCGGCAAAGAGAACGAGATGGATTGGGACGACTCTGCCCTGACCATCACTGTGAACCCCATGGAGACGTATGAGGACCAGCACAGCAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCGAGGACGGGGACGAGGAGGATGACATCACCAGCGCCGAGTCGGAGAGCAGCGAGGAGGAGGAGGGGGAGCACGGGGACCAGCAGGCTGCGAACAGGCAGCAGCAGCTGGAGTGGGACGACTCCACCCTCAGCTACTGA

Related Sequences

bmy_06055T0 Protein

Length: 919 aa      View alignments
>bmy_06055T0
MKRKILMTPEESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQAYDCGKGPDGANVKKSHKATVHIQVNDVNEYAPVFKEKSYKATVVEGKQYDSVLRVEAVDADCSPQFSQICSYEIVTPDVPFAVDKDGYIKNTEKLNYRKEQQYKLTVTAYDCGKKRATEDVLVKISIKPTCTPGWQGWNNRVEYEPGTGALALFPNVHLETCDESVASVQVTVELETSHIGKGCDRDTYSEKSLHRLCGAASGTAELLPSPGGSLNWTIGLPTDNGHDSDQVFEFNGTQGVRVPDGVVSVNPKEPFTISVWMRHGPFGRKKETVLCSSDKTDMNRHHYSLYVHGCRLIFLLRQDPSEEKKYKPAEFHWKLNQVCDEEWHHYVLNVEIPNVTLYVDGVSHEPFSVTEDYPLHASKIETQLMVGACWQEYSGVENDNETEPVPVASAGGDLHMTQFFRGNLAGLTIRSGKLADKKVIDCLYTCKEGLDLHVPEDSGSGVKIQANPSQSVLTLEGEDVGELDKAMQHISYLNSRQFPTPGIRRLKITSVVKCFNEATCLSVPPLDGYVMVLQPEEPKISLSGIHHFARAASEFESSEGVFLFPELRIISTITREVEPEGEGDEDPTVQESLVSEEIVHDLDTCEVTVEGEELNREQESLEVDAGRLQQKGIEVSSSDLGVVFTGVDTMASYEEVLHLLRYRNWHTRSLLDRKFKLVCSELNGRYVSNEFQVEVNVIHTANPVEHASHMAAQPQFVHPEHRSFIDLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDSGKENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGDEEDDITSAESESSEEEEGEHGDQQAANRQQQLEWDDSTLSY*