Part of scaffold_222 (Scaffold)

For more information consult the page for scaffold_222 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYNM ENSTTRG00000005963 (Bottlenosed dolphin)

Gene Details

synemin, intermediate filament protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005640, Bottlenosed dolphin)

Protein Percentage 92.11%
cDNA percentage 95.37%
Ka/Ks Ratio 0.82083 (Ka = 0.0457, Ks = 0.0557)

SYNM ENSBTAG00000011752 (Cow)

Gene Details

synemin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015606, Cow)

Protein Percentage 79.67%
cDNA percentage 86.28%
Ka/Ks Ratio 0.44301 (Ka = 0.1192, Ks = 0.269)

SYNM  (Minke Whale)

Gene Details

synemin, intermediate filament protein

External Links

Gene match (Identifier: BACU019089, Minke Whale)

Protein Percentage 95.3%
cDNA percentage 97.19%
Ka/Ks Ratio 0.7176 (Ka = 0.0259, Ks = 0.0361)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3705 bp    Location:1125086..1133941   Strand:+
>bmy_06122
ATGTGCCACAAGATGCACTGTTCAATTTCTACAGAATTCAGAAACAAGCCCTATCAATATACCACCTCAGTATTACAGAGGGAAAATGAAAGAAATCTGTTTCCAAGGCAGAAAGCACGTTCGGCGAGCTTCAATCACAGCCTGGCGCCACGTTCTCAGACGGCTGTTAGAAACGCTGCCAGAAGAGACTTCCTGGGCTCCAGATACTCTTCCTTTATCACTACCCCGCAGGAAAACTCTTATGAAAAAACTGCCAGCAGTCAAACCAACTTCAGAACTTTCTCTCCAACCCCTGGTCTTTTAAGAAATACTGAAGCTCAAGTGAAAACATTCCCTGATAGACCAAAAACCGAAGGTATAAAGGGCCCCCCCACTAATTTAGCCAAAGAGTCCGCCGTTGCCCAAGAGTCCTACCAAGAATGCCGGGACAATGTGGCGGCAGGTGCTTCCGAGAGCACTTGGTCAAATGAGAGGACCATCATTTTGGGAAAGAAAATGGAAGCTAAAGCCACAAGGGAGCAGGAGAGAAACAGACCGGGAACCATCCAAACAAAGCGAGAAGAGAAAATGTTTGATTCTAAAGAGAAGGCTTCAGAGGAGAGAAACTTAAGGTGGGAAGAACTTACAAAGTTAGATAAAGAAGCAAGAAAGAGAGAAAGCCAGCAAATGAAGGAAAAGGCAAAGGAGGAGTCACTGGAGAAATGTGTGAGGGAGAGAGAGATACCGATCAGTCTAGAAGTATCCCAGGACAGCACAGCAGAGGCGGTCCCCCAAGGTCTCCAGACACCCCTAAAGAAGGATGCTGGTGATGGAACACATAGAGGGGTGGAAACGAGAGAGGCAGGGCTCAGGCTGGGCACCAGCGACACTGCAGGCTCTCTGAAAGGTAATTCCATGACTGAAACCATAGCTGAGAACATCGTTTCCAGTATCCTGAAGCAGTTTACCCACTCTCCTGAGACAGAAGCATCTGCTGATTCTTTTCCAGACACAAAAGTCACTTACGTGGACAGGAAAGAGCTTCCCGGTGACAGGCAAACAAAGACTGAGTTAGTCGTGGAGTCAAAACTGACTGAAGAGGTCGACATTTCAGATGAAGCTGGCCTGGACTACCTGTTAAGCAAGGATGCTAAGGAGGTGAAGCTGAAAGGAAAATCAGCTGAGCATTTGATCGGAGATATAATCAATCTTGGTCTGAAGGGGAGAGAGGGGAGAGCAAAGGTTGTCAACGTGGAGATCATCGAAGAGCCCGTGAGCTATGTCAGTGGCGAGAAAGCGGATGAGTTTTCTACACCATTCGAAGTGGAGGAGGTCGATGACGTGTCTTCGGGCTCCAAGGGGCTTGTTGTTGAGGAGGAAGTTTACAGAGAAACAGATACCACGTGCTCAGCGAATGAAGGTCAAAAGACCAGGCAGCCCCAAGAGAACATAACTCACTTTGAAGAAGTGACGGAGGCAGGTGACTTGGAGGGAGAACAGAGTTATTTGGTGTCGACTCCGGACGAATACCCTGGTGGCCACGAGAGAGTTGAAGGCTCTGTGTACGGGCAGATCCACATCGAGGAGGAATCCACCATCAGGTACTCCTGGCAAGATGAAATTGTGCCAGGTTCTCGGAGAAGAATGGAGGGGGACGATGCATTGGGAGAGAAGGTTGTGAAGCCACTGGATGTTCCAGAAGCATCCCTGGAGGGGGACATGGGTTCTACTCACTGGAAAGGACAAGCGAGAAGTGGTGAATTTCATGCTGAACCCATAGTCATTGAAAAGGAAATTAAAATACCACATGAACTCCACACATCCATTAAGGGAGGCTTCAAGGAGCCCAGGCACCAGCTGGTGGAAGTGATTGAGCAGCTGGAGGAGAGCCTTCCGGAGCACATGAAGGAAGAGCTGTCCGCCTTCACCGGAGAGGGTCAGGGCGGGCCTGGGGGTGTTTCCGTTGACGTAAAGAAAGTCCAGACCGCGGGTGGCGGGGCTGTGACCTTAGTGGCCGAAGTCAACCTCTCGCAGACGGTGGATGCCGATCAGTTAGACCTGGAGGAGCTGAGCAGGGATGAAGCGGGTGAGATCGAGAAGGCCGTGGAGTCGGTGGTACGAGACGGCCTGGCTAGGCGGCACAGCCCTGCCCCTGGCAGCCCAGATGGGGAGGCCAGAGTGGAGGCCCCGGCTGCCAGCCACGGCTTCAAGCGCTGGGCCACCCAGGAGCTGTACAGCCCCTCTGGTGAGGAGGCCGACGCCGGCCGGGCCTCTCCCCGCACGGAGTTGGTCACTTCCCAGGGCCCCATGTCGGCCACCGTGGAAGTCACCAGCCCAAGGGGCTTTGCCCAGTCACATGTGCTGGAGGACGTCAGTCAGTCTGTGAGGCACGTTCAAAGAGAGCCCCCTGGAACTTGGAGGACTGAGCAAGTCTCACCCAAAGGACCCGCCGCCCAGGTGGTGGAGGTAAGTGGGGAAGGTGACCTGAGTTGGGCAGCAAGCTCGGCGGGAGCCAGCTTGTCTGCAAGGCATCTTACGTTGGGTCCCGATCAAAGTCAATTGTCCAAAGAAGTCTTCTTCCCAGGGCCTGACCCTCCCTGTCCGGGGGCCGGGGACTCAGAAGAGCCTGGCCCGGCAGAGCTTTCCACAGATCCTGACAGATCGGGGAGGCACAGCCCATTGGGCTCCCAACAATTTCATTCTAAGAGGGAAATTATTTTTCAGGCTCCCGCTTCTGAGGCAGGGAAGGTTGGTGATTATTTTTCAACAGAAGAGTCAGCGGGTACCCAGACTTCTGTGAAGCACCTTCAGTTAGGCCCCAAGGAGGGGTTCAGTGAGCAGATCCAGCTCACAGCCCCCCTTTCAGACAGAATGGAGTTGGGTGTCAGAGAAGCTTCTGTGCACACGGAAGCGTGGTCAGGGAATGGCACATCCATCAGGCACATCAAGACCGTGCCTCAGAGGCATCAMGGCACCGAGCAGATAGTTCCCCCACCCTCGGAATTTAGCGACTCAGAAAGCAAAGCCCACAGAGAGGGCTCGGCAGATGTGACCCAGGCCACCAGTAGTTACACTGTGGGTAGGAAAATCCTGATGACTGAAAAGAGCACCTTCCAAAGGGCCGTTTCTGAATCGCCTCAGGAGGCTAGTTCAGGAGACACGTCAGGGGCAGAAGCGACATCAGGTGTGAGCAGATCCTTTAGGCATATTCAGCTGGGTCCTGCAGAAACCAACGCCTCTGCACACGTTGTCTTCCATGGACCCATTTCCAAAACATTTGCACTTGCTGGTTCGGTGGACTCCCCTGAGGTAGGCGAGGTCGCAGACAGTGGCAGAACGCTGAGGCACGTTGCCCTGGGGCCCAAAGAAACTTCGTTTACCTTTCAGATGGACGTGAGTAACGTAGAGACGACCCCCCGCTGGACCCAAGAGGCCACAGTCCTCTTCCCCGCAGGGACGGAAGCAGAAGCTCATAGTGTGTCTGACCGTGATGCTTGGAGAGATGCCAGCAGTAGGAATGACCTGGCAGCTGGCGTGAGCTTTCAGGGCTCTGCTGGGGACAGACACCAGGCCCCTGGGGAAAAGGGCAAGGAGCAGGCTGAGTTTGATAAGATGGTGCAGCTGCAGAGGATGGTAGACCAAAGGTCAGTGATTTCAGATGAAAAGAAGGTTGCCCTCCTCTATCTAGACAATCAGGAGGAGGAGAATGAGGGACACTGGTTTTGA

Related Sequences

bmy_06122T0 Protein

Length: 1235 aa      View alignments
>bmy_06122T0
MCHKMHCSISTEFRNKPYQYTTSVLQRENERNLFPRQKARSASFNHSLAPRSQTAVRNAARRDFLGSRYSSFITTPQENSYEKTASSQTNFRTFSPTPGLLRNTEAQVKTFPDRPKTEGIKGPPTNLAKESAVAQESYQECRDNVAAGASESTWSNERTIILGKKMEAKATREQERNRPGTIQTKREEKMFDSKEKASEERNLRWEELTKLDKEARKRESQQMKEKAKEESLEKCVREREIPISLEVSQDSTAEAVPQGLQTPLKKDAGDGTHRGVETREAGLRLGTSDTAGSLKGNSMTETIAENIVSSILKQFTHSPETEASADSFPDTKVTYVDRKELPGDRQTKTELVVESKLTEEVDISDEAGLDYLLSKDAKEVKLKGKSAEHLIGDIINLGLKGREGRAKVVNVEIIEEPVSYVSGEKADEFSTPFEVEEVDDVSSGSKGLVVEEEVYRETDTTCSANEGQKTRQPQENITHFEEVTEAGDLEGEQSYLVSTPDEYPGGHERVEGSVYGQIHIEEESTIRYSWQDEIVPGSRRRMEGDDALGEKVVKPLDVPEASLEGDMGSTHWKGQARSGEFHAEPIVIEKEIKIPHELHTSIKGGFKEPRHQLVEVIEQLEESLPEHMKEELSAFTGEGQGGPGGVSVDVKKVQTAGGGAVTLVAEVNLSQTVDADQLDLEELSRDEAGEIEKAVESVVRDGLARRHSPAPGSPDGEARVEAPAASHGFKRWATQELYSPSGEEADAGRASPRTELVTSQGPMSATVEVTSPRGFAQSHVLEDVSQSVRHVQREPPGTWRTEQVSPKGPAAQVVEVSGEGDLSWAASSAGASLSARHLTLGPDQSQLSKEVFFPGPDPPCPGAGDSEEPGPAELSTDPDRSGRHSPLGSQQFHSKREIIFQAPASEAGKVGDYFSTEESAGTQTSVKHLQLGPKEGFSEQIQLTAPLSDRMELGVREASVHTEAWSGNGTSIRHIKTVPQRHXGTEQIVPPPSEFSDSESKAHREGSADVTQATSSYTVGRKILMTEKSTFQRAVSESPQEASSGDTSGAEATSGVSRSFRHIQLGPAETNASAHVVFHGPISKTFALAGSVDSPEVGEVADSGRTLRHVALGPKETSFTFQMDVSNVETTPRWTQEATVLFPAGTEAEAHSVSDRDAWRDASSRNDLAAGVSFQGSAGDRHQAPGEKGKEQAEFDKMVQLQRMVDQRSVISDEKKVALLYLDNQEEENEGHWF*