Part of scaffold_222 (Scaffold)

For more information consult the page for scaffold_222 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRRC28 ENSTTRG00000005965 (Bottlenosed dolphin)

Gene Details

leucine rich repeat containing 28

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005642, Bottlenosed dolphin)

Protein Percentage 79.89%
cDNA percentage 82.54%
Ka/Ks Ratio 0.65606 (Ka = 0.1813, Ks = 0.2764)

BT.34089 ENSBTAG00000000539 (Cow)

Gene Details

leucine-rich repeat-containing protein 28

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000700, Cow)

Protein Percentage 80.42%
cDNA percentage 81.13%
Ka/Ks Ratio 0.41432 (Ka = 0.1679, Ks = 0.4052)

LRRC28  (Minke Whale)

Gene Details

leucine rich repeat containing 28

External Links

Gene match (Identifier: BACU014445, Minke Whale)

Protein Percentage 79.37%
cDNA percentage 82.36%
Ka/Ks Ratio 0.7191 (Ka = 0.1878, Ks = 0.2612)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 570 bp    Location:1232740..1391074   Strand:+
>bmy_06124
ATGAATATGGTCCTGAAGACATCTTCTTACCATGAGTTGAAAAAACTCACTGGGTATCTTCACTCAAATAACATAGTTGTGGTTCCGGAAGCCATTGGGTCCCTTGTAAAACTACAGTGTTTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACCTGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGAATTATAGCACTTTTCTCTCTAATCCAGATTTAGGTCGATCTCGAGAACTACAATATGTGTACGTGGATAACAACATTCATCTGAAAGGCTTGCCGTCCTATCTGTACAACAAAGTCATCGGGTGCAGTGGATCTGGACTTTCTGTCTCCAATCTCGTTACCCAGAAGTCTCCTGGAGCTGCTGCACTGCCCCTTGGGGCACTGTCACCGGTGTAG

Related Sequences

bmy_06124T0 Protein

Length: 190 aa      View alignments
>bmy_06124T0
MNMVLKTSSYHELKKLTGYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHLCLSLQYLTVDRNRLWNYSTFLSNPDLGRSRELQYVYVDNNIHLKGLPSYLYNKVIGCSGSGLSVSNLVTQKSPGAAALPLGALSPV*