Part of scaffold_239 (Scaffold)

For more information consult the page for scaffold_239 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CD40 ENSTTRG00000000488 (Bottlenosed dolphin)

Gene Details

CD40 molecule, TNF receptor superfamily member 5

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000458, Bottlenosed dolphin)

Protein Percentage 80.0%
cDNA percentage 85.36%
Ka/Ks Ratio 0.46779 (Ka = 0.1363, Ks = 0.2914)

BT.42498 ENSBTAG00000020736 (Cow)

Gene Details

tumor necrosis factor receptor superfamily member 5 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027630, Cow)

Protein Percentage 71.07%
cDNA percentage 79.76%
Ka/Ks Ratio 0.46042 (Ka = 0.1963, Ks = 0.4264)

CD40  (Minke Whale)

Gene Details

CD40 molecule, TNF receptor superfamily member 5

External Links

Gene match (Identifier: BACU011369, Minke Whale)

Protein Percentage 92.15%
cDNA percentage 95.11%
Ka/Ks Ratio 1.10698 (Ka = 0.0533, Ks = 0.0482)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 891 bp    Location:1073519..1063088   Strand:-
>bmy_06248
ATGGGCTGGGACAGTGGAAGTGGAAGAGACCCGGTCCTGGCGCTCTCTCCTCCCGCCGCCTGGTTCTCACCTCGTCATGGTTCGTCTGCCTCTGCAGTGTCTCCTCTGGGGCTGCTTTTTGACCGCCGTCCACCCAGAACCACCCACTTCATGCGGAGAAAACCAATACCTAACAAGCAGTCGAAACTGATGAACGACTGCACAGAGGTCACCGACACAGAATGCCTTCCCTGCAGTAAAGGCGAATTCCTAGCCACCTACAGCAGAGAGAAATACTGTCACCAGCACAAATACTGCAACCCCAACCTAGGGCTCCAGATCCAGAGGGAGGGCACCACGGAAACAGACACCATTTGCATATGTGATGAAGGCCAACACTGTACCAGTCACACCTGCGAAAGTTGTACCCCGCACAGCTTGTGTCTCCCTGGCTTTGGGGTCAAGCAGATTGCTACAGGGGTTTCTGATACCATCTGTGAACCCTGTTCGGTCGGCTTCTTCTCCAATGTGTCATCTGCTTTTGAAAAGTGTCACCCTTGGACAAGCTGCGAGAGCAAAGGCCTGGTGGAACAACATGCAGGGACTAACAAGACAGATGTTGTCTGTGGTTTCCAGAATCGGACGAGAGCCCTGGTGGTGATCCCCATCACGATGGCGATCCTTTTCACTGTCCTGCTGGTATCTACCTGTATCAGAAAGATGGCCAAGAAGCAGGAGACTAAGGCCCTGCACCCTAAGGCTGAAAGGCAGGATCCTGTGGAGACGATTGATCCAGAGGATTTTCTCGGCCCCCACTCCACCCCTCCGGTGCAGGAGACCTTACACTGGTGTCAGCCGGTCGCCCAGGAGGATGGCAAAGAGAGCCGCATCTCCGTGCAGGAGCGAGAGTGA

Related Sequences

bmy_06248T0 Protein

Length: 297 aa      View alignments
>bmy_06248T0
MGWDSGSGRDPVLALSPPAAWFSPRHGSSASAVSPLGLLFDRRPPRTTHFMRRKPIPNKQSKLMNDCTEVTDTECLPCSKGEFLATYSREKYCHQHKYCNPNLGLQIQREGTTETDTICICDEGQHCTSHTCESCTPHSLCLPGFGVKQIATGVSDTICEPCSVGFFSNVSSAFEKCHPWTSCESKGLVEQHAGTNKTDVVCGFQNRTRALVVIPITMAILFTVLLVSTCIRKMAKKQETKALHPKAERQDPVETIDPEDFLGPHSTPPVQETLHWCQPVAQEDGKESRISVQERE*