Part of scaffold_239 (Scaffold)

For more information consult the page for scaffold_239 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MMP9 ENSTTRG00000012110 (Bottlenosed dolphin)

Gene Details

matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011485, Bottlenosed dolphin)

Protein Percentage 95.25%
cDNA percentage 97.28%
Ka/Ks Ratio 0.4228 (Ka = 0.0217, Ks = 0.0514)

MMP9 ENSBTAG00000020676 (Cow)

Gene Details

matrix metalloproteinase-9 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027556, Cow)

Protein Percentage 88.22%
cDNA percentage 91.35%
Ka/Ks Ratio 0.21469 (Ka = 0.0556, Ks = 0.259)

MMP9  (Minke Whale)

Gene Details

matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)

External Links

Gene match (Identifier: BACU011371, Minke Whale)

Protein Percentage 97.23%
cDNA percentage 97.78%
Ka/Ks Ratio 0.26022 (Ka = 0.0147, Ks = 0.0563)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1887 bp    Location:1175173..1167746   Strand:-
>bmy_06251
ATGAACCCCTGGCAGCCCTTGGTCCTGGCGCTCCTGGTGCTGGGCTGCTGCTCTGCTGCCCCCAGACCACGCCAGCCCACCTTTGTGGTCTTCCCGGGAGAACTACGAAGCAATCTCACCGACAGGCAGCTGGCAGAGGAATATCTGTACCGCTACGGCTACACTCATGTGGCAGAGATGAACGAGGATGATCAGTCCCTGCGTCGGCCTCTGCAGCGTCTCCAGCAGCGCCTGGCCCTGCCGGAGACTGGCGAGCTGGACAGCACCACCCTGAATGCCATGCGTGCCCCGCGCTGTGGCGTCCCAGACCTGGGCAGATTCCAGACCTTTGAGGGCGACCTCAAGTGGCACCATCACAACATCACCTACTGGATCCAAAACTACTCGGAAGACTTGCCGCGCTCCGTGATCGACGACGCCTTTGCCCGCGCCTTCGCGCTCTGGAGCGCGGTGACGCCGCTCACCTTCACTCGCGTGTATGGCCGTGAAGCCGACATAGTCATCCAGTTTGGTGTTAGGGGCATTCAGGGAGACGCCCACTTCGACGATGAAGAGTTGTGGTCTCTGGGCAAAGGCGTCGGACTCTACACCCAGGACGGCAATGCGGACGGCAAGCCCTGCGTTTTTCCGTTCACCTTTGAGGGCCGCTCCTACTCCGCCTGTACCACCGACGGTCGCTCGGACGGCTACCGCTGGTGCGCCACCACCGCCAGCTATGACCAGGACAAGCTCTATGGCTTCTGCCCGACCCGAGTTGACGCGACGGTGACCGAGGGCAACTCGGCGGGGGAGCTGTGCGTCTTCCCCTTCATCTTCCTGGGCGAGGAGTACTCGGCCTGCACCAGAGAGGGCCGCCGTGATGGGCAGCTCTGGTGCGCCACCACCTCCAACTTCGACAGAGACAAGAAGTGGGGCTTCTGCCCGGATCAAGGATACAGCCTGTTCCTTGTGGCGGCGCACGAGTTTGGCCACGCGCTGGGCTTAGATCACTCGTCCGTGCCAGAGGCGCTCATGTACCCCATGTACAGCTTCACTGAGAAGCACCCCCTGCATAAGGACGATGTGCAGGGCATCCAGCATCTGTATGGTCCTCGCCCCGAACCTGAACCACGGCCTCCAACCACTGCCACAGCTGAACCGCAGCCCACCGCCCCTCCCACGGTCTGCGCCACGGGGCCTCCCATTGCCCCCACCTCAGAACGCCCCACTGCTGGCTCCACAGGCCCCCCTGCAGCTGGCCCCACGGGTCCTCCCACTGCTGGCCCTTCTGCGATCCCTACAAGGTCCCTGGATCCAGCGGACGATGTCTGCAACGTGAACATCTTCGACGCCATCGCGGAGATCGGGAATCGCCTGTATCTCTTCAAGGATGGGAGGTACTGGCGACTCTCTGAGAGCGGGGGACGCCGGTTGCAGGGTCCCTTCCTTATCAAGAACACGTGGCCTGCGCTGCCCCGCAAGCTGGACTCCGCTTTTGAGGATCCGCTCACGAAGAAGATTTTCTTCTTCTCTGGGCGCCAAGTGTGGGTGTACACAGGCGCGTCGGTGCTAGGCCCAAGGCGTCTGGACAAGCTGGGCCTGGGCCCGGAAGTGGCCCAAGTCACCGGGGCCCTGCCGCGCGCCGGCGGTAAGGTGCTGCTGTTCAGCAGGCAGAGCTTCTGGAGGTTCGACGTGAAGACACAGAAGGTGGATCCCCGGAGCGCCACCCCAGTGGACCAGATGTTCCCCGGGGTGCCCATGAGTACTCACGACATCTTTCAGTACCAAGAGAAAGCTTACTTCTGCCAGGATCGCTTCTACTGGCGCGTGAGTTCCCGGAATGAGGTGAATCAGGTGGACTATGTGGGCTACGTGACCTTTGACCTCCTGCAGTGCCCCGAGGACTAG

Related Sequences

bmy_06251T0 Protein

Length: 629 aa      View alignments
>bmy_06251T0
MNPWQPLVLALLVLGCCSAAPRPRQPTFVVFPGELRSNLTDRQLAEEYLYRYGYTHVAEMNEDDQSLRRPLQRLQQRLALPETGELDSTTLNAMRAPRCGVPDLGRFQTFEGDLKWHHHNITYWIQNYSEDLPRSVIDDAFARAFALWSAVTPLTFTRVYGREADIVIQFGVRGIQGDAHFDDEELWSLGKGVGLYTQDGNADGKPCVFPFTFEGRSYSACTTDGRSDGYRWCATTASYDQDKLYGFCPTRVDATVTEGNSAGELCVFPFIFLGEEYSACTREGRRDGQLWCATTSNFDRDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYSFTEKHPLHKDDVQGIQHLYGPRPEPEPRPPTTATAEPQPTAPPTVCATGPPIAPTSERPTAGSTGPPAAGPTGPPTAGPSAIPTRSLDPADDVCNVNIFDAIAEIGNRLYLFKDGRYWRLSESGGRRLQGPFLIKNTWPALPRKLDSAFEDPLTKKIFFFSGRQVWVYTGASVLGPRRLDKLGLGPEVAQVTGALPRAGGKVLLFSRQSFWRFDVKTQKVDPRSATPVDQMFPGVPMSTHDIFQYQEKAYFCQDRFYWRVSSRNEVNQVDYVGYVTFDLLQCPED*