Sequence detailsbmy_06253 (Coding sequence)

Part of scaffold_239 (SequenceType object (1))

For more information consult the page for scaffold_239 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCIF1ENSTTRG00000012100 (Bottlenosed dolphin)

Gene Details

PDX1 C-terminal inhibiting factor 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011475, Bottlenosed dolphin)

Protein Percentage 99.15%
cDNA percentage 98.44%
Ka/Ks Ratio 0.06007 (Ka = 0.0041, Ks = 0.069)

BT.24835ENSBTAG00000010126 (Cow)

Gene Details

phosphorylated CTD-interacting factor 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000013362, Cow)

Protein Percentage 96.74%
cDNA percentage 92.45%
Ka/Ks Ratio 0.0517 (Ka = 0.0222, Ks = 0.4296)

PCIF1 (Minke Whale)

Gene Details

PDX1 C-terminal inhibiting factor 1

External Links

Gene match (Identifier: BACU011373, Minke Whale)

Protein Percentage 95.98%
cDNA percentage 96.17%
Ka/Ks Ratio 0.20576 (Ka = 0.0243, Ks = 0.1181)

Additional orthologs identified in other species via the OPTIC pipeline.

PCIF1 (Human)   Pcif1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2628 bp    Location:1234412..1223233   Strand:-
Raw sequence 
>bmy_06253
ATGGAACAGCAGGGAAGGACGGCAGGAAGGGGAGGGGGCCCACAGCAAGCGGGGTCTAAAGAGTCGGCCTGTCCTGCCACACTCAACATGGCGGCACGGCAACGGCGAGGTCCCTCAGAGGCGGTACCAGCGCATGCGCAGCGCGAAGTCCCGGCCCGGGACACAAGATGGCGGCAGCGGCGTTGGGGAGGGCGAGGCGGAGGCGGCAAAACGGGCGGTCGAGCAGAACGTGTAGCCGCGTCCCCTCGAGTCCGCTGCGGGCAGGAATCCCCTGGGCTCCCGTCCACTCCACTGCTGACCAGCCCACACGCCTGCACTGCACGCTTTCCTGCAGGCCTCCCGACTGCCTCTGTGGGACCAGGGGGTCCATCTGGCCGGAGAAGAAAGCCCTCTCATGCTAGCGTTGCAGACCCCAGAGGGTCCGGTGTGGGTGCTGAGATGGCCAATGAGAATCACGGCAGCCCCCGGGAGGAAGCATCCTTGTTGAGTCACTCCCCAGGCACCTCCAATCAGAGCCAGCCCTGTTCTCCAAAGCCCATCCGCCTGGTGCAGGACCTCCCAGAGGAGCTGGTGCACGCCGGTTGGGAGAAGTGCTGGAGCAGAAGGGAGAACCGTCCCTACTACTTCAACCGGTTCACCAACCAGTCCCTGTGGGAGATGCCCGTGCTGGGCCAGCACGATGTGATTTCGGACCCTTTGGGGCTGAATGCGACCCCCCTGCCCCAAGACTCGAGCTTGGTGGAAACCCCCCCGGCTGAGAACAAGCCCCGAAAGCGGCAGCTCTCGGAAGAGCAGCCCAGCGGCAATGGCGTGAAGAAGCCCAAGATTGAAATCCCCATGACACCCACTGGCCCATCAGTGCCCAGCTCCCCCAGCGTCCCAGGAACCCCAACCCTGAAGATGTGGGGGACATCCCCTGAAGATAAACAGCAGGCAGCTCTCCTCCGACCCACTGAGGTGTACTGGGATCTCGACATTCAGACCAACGCTGTCATCAAGCACCGGGGGCCATCAGAGGTGCTGCCTCCGCATCCCGAGGTGGAGCTGCTCCGCTCCCAGCTCATCCTGAAGCTTCGGCAGCACTACCGGGAGCTGTGCCAGCAGCGAGAGGGCATCGAGCCCCCCCGGGAATCCTTCAACCGCTGGATGTTGGAGCGCAAGGTCGTGGACAAAGGCTCTGATCCCCTGTTGCCGAGCAACTGCGAACCGGTCGTGTCACCTTCCATGTTTCGCGAAATCATGAATGACATTCCCATCAGGTTATCCCGAATCAAGTTCCGGGAGGAAGCCAAGCGTCTGCTCTTCAAATACGCAGAGGCTGCCAGGCGGCTCATCGAGTCCAGGAGTGCATCTCCCGACAGCAGGAAGGTGGTCAAGTGGAACGTGGAGGATACCTTCAGCTGGCTGCGGAAGGACCACTCCGCCTCCAAGGAGGACTATATGGATCGCCTGGAGCACCTACGGAGGCAGTGTGGCCCCCACGTCTCGGCCGCAGCCAAGGACTCCGTGGAGGGTATCTGCAGTAAGATCTACCACATCTCTCTGGAGTACGTCAAACGGATCCGAGAGAAGCACCTTGCCATTCTCAAGGAAAACAACATCCCAGAGGAGGTGGAGGCCCCCGAGGTGGAGCCCCGCCTGGTGTACTGCTACCCGGTACGGCTGGCCGTGTCTGCACCTCCCATGCCCAGCGTGGAAATGCACGTGGAGAATAACGTGGTCTGCATCCGGTATAAGGGCGAGATGGTCAAGGTCAGCCGCAACTACTTCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATCGACGATTCTGCCTTTGAGAGGTTCCTGCCCCGAGTCTGGTGTCTTCTCCGCCGGTACCAGATGATGTTCGGCGTGGGCCTCTACGAGGGGACAGGCCTGCAGGGGTCGCTGCCCGTGCACGTCTTCGAGGCCCTCCACCGACTTTTCGGCGTCAGCTTCGAGTGTTTCGCCTCACCCCTCAACTGCTACTTTCGCCAGTACTGCTCCGCCTTCCCCGACACGGACGGCTACTTTGGCTCCCGCGGGCCCTGCCTGGACTTCTCCCCGCTGAGTGGTTCCTTCGAGGCCAACCCTCCGTTCTGCGAGGAGCTCATGGACGCCATGGTCTCTCACTTCGAGGTGCGTGTGTCGCCACGGGTGGGGGGCGGCGAGCAAGATGGCCGGCCGCTGGAGGGCAAGGCCCTGATGGCCACCAAACTGCTCGAGAGCTCGCCAGAGCCCCTGTCCTTCATCGTGTTCATCCCCGAGTGGCGGGAACCCCCGACCCCAGCGCTCACCCGCATGGAGCAGAGCCACTTCAAGCGCCACCAGCTGGTCCTGCCCGCCTTCGAGCACGAGTACCGCAGCGGCTCCCAGCACGTCTGCAAGAAGGAGGAAATGCACTACAAGGCCGTCCACAGCACGGCCGTGCTCTTCCTACAGAACGACCCTGGATTTGCCAAGTGGGGGCCAACGCCCGAGCGGCTGCAGGAGTTGAGCGCCGCCTACCGGCAGTCGGGCCGCAGCCATGGCTCTGTCGGCTCCTCGTCGTCCTCCTCGGAGGCCAAGGACCGGGACTCAGGCCGCGAGCAGGGCCCCAGCCGGGAGCCTCACTCCACTTAA

Related Sequences

bmy_06253T0 SequenceType object (3)

Length: 876 aa      View alignments
>bmy_06253T0
MEQQGRTAGRGGGPQQAGSKESACPATLNMAARQRRGPSEAVPAHAQREVPARDTRWRQRRWGGRGGGGKTGGRAERVAASPRVRCGQESPGLPSTPLLTSPHACTARFPAGLPTASVGPGGPSGRRRKPSHASVADPRGSGVGAEMANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPMTPTGPSVPSSPSVPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNIPEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHVENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMVSHFEVRVSPRVGGGEQDGRPLEGKALMATKLLESSPEPLSFIVFIPEWREPPTPALTRMEQSHFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHSTAVLFLQNDPGFAKWGPTPERLQELSAAYRQSGRSHGSVGSSSSSSEAKDRDSGREQGPSREPHST*