Part of scaffold_239 (Scaffold)

For more information consult the page for scaffold_239 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CTSA ENSTTRG00000016004 (Bottlenosed dolphin)

Gene Details

cathepsin A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015168, Bottlenosed dolphin)

Protein Percentage 96.96%
cDNA percentage 98.11%
Ka/Ks Ratio 0.38032 (Ka = 0.0144, Ks = 0.0378)

CTSA ENSBTAG00000027337 (Cow)

Gene Details

Lysosomal protective protein Lysosomal protective protein 32 kDa chain Lysosomal protective protein 20 kDa chain

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000039003, Cow)

Protein Percentage 90.57%
cDNA percentage 92.03%
Ka/Ks Ratio 0.13932 (Ka = 0.042, Ks = 0.3016)

CTSA  (Minke Whale)

Gene Details

cathepsin A

External Links

Gene match (Identifier: BACU011375, Minke Whale)

Protein Percentage 97.6%
cDNA percentage 97.82%
Ka/Ks Ratio 0.26354 (Ka = 0.0144, Ks = 0.0545)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1569 bp    Location:1266145..1258227   Strand:-
>bmy_06255
ATGACTTCCCGTCGCGGGCCACCTCCGGGAGAGCAAGGACGCGAGGGAGCAGAGATGGTCCGAGCCGCGCTGTCGCCGCCATTCCTCCTGCCGCTGCTGCTGCTCTCCTGGGCGCCCCGAAGCGAGGCAGCCCCCGACCAGGACGAGATCCAGTACCTGCCAGGGCTGGCCAAGCAGCCGTCTTTCCGCCAGTACTCTGGCTATCTCAGAGGCTCCGGCTCCAAGCACCTCCACTACTGGTTTGTGGAGTCCCAGAAGGATCCCAAGAGCAGCCCTGTGGTGCTGTGGCTCAATGGAGGGCCGGGCTGTAGCTCCCTAGACGGCCTCCTCACCGAGCACGGCCCCTTCCTGATCCAGCCAGACGGTGCCACTCTGGAGTACAACCCCTATTCCTGGAACCTGATTGCCAATGTGTTATACCTCGAGTCCCCAGCTGGGGTGGGCTTTTCCTACTCCGATGACAAGTCTTATGCAACCAATGACACCGAGGTGGCCCAGAGCAATTTTGAAGCCCTTAAAGATTTCTTCGGCCTCTTCCCGGAATACAAGGACAACGAGCTTTTCCTGACGGGAGAGAGCTATGCTGGCGTCTACATCCCCACCCTGGCAGTGTTGGTCATGCAGGACCCCAGCATGAACCTTCAGGGGCTGGCTGTGGGCAATGGACTCTCCTGCTATGAGCAGAATGACAACTCCCTGGTCTATTTCGCCTACTACCATGGCCTTCTGGGAAACAGGCTCTGGTCTTCCCTCCAGACCCACTGCTGCTCTCAGAACAAGTGTAACTTCTACAACAACAAAGACCCAGAATGCGTGACCAATCTTCAGGAAGTGTCCCACATCGTGGGCAGCTCTGGCCTCAATGTCTACAACCTCTACGCTCCATGTGCTGGGGGGGTGCCCAGCCATCCAAGGTGGGCCCTGCCGTGTGTCCCTTGGGCCAACCCCAGTCCCATCTGGAGGCTGAGGCACTCATCCCCCGACCTCGCTTGCAGGTACGAGAAGGACACTGTCGTGGTCCAGGATCTGGGCAACATCTTCACTCGCCTGCCACCCAAGCGGATGTGGCATCAGGCACTGCTGCATTCTGCGGGAAAGGTGCGCCTGGACCCCCCCTGCACCAACACCACAGCCGCCTCCACCTACCTCAACTACCCTCTCGTGCGGAAGGCCCTCCACATCCCCAAGCAGCTGCCCCGCTGGGACGTGTGCAACTTCCTGGTGAATATCCAGTACCGCCGTCTCTACCAAACCATGTGTTCCCAGTACCTGAAGCTGCTGGCCGCACAGAAATACCGGATCCTGCTGTACAACGGAGATGTGGACATGGCCTGCAATTTCATGGGAGATGAGTGGTTTGTGGATTCCCTCAACCAGAAGATGGAGGTACAGCGCCGGCCCTGGTTGGTGGACTACGGGGACGGCGGGGAGCAGATCGCTGGCTTCGTGAAGGAGTTCTCCCACATCGCCTTTCTTACCATCAAGGGTGCCGGACACATGGTCCCCACTGACAAGCCCCAGGCTGCCCTCACCATGTTCTCCCGCTTCCTGAATAAGCAGCCATACTGA

Related Sequences

bmy_06255T0 Protein

Length: 523 aa      View alignments
>bmy_06255T0
MTSRRGPPPGEQGREGAEMVRAALSPPFLLPLLLLSWAPRSEAAPDQDEIQYLPGLAKQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLIQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNFEALKDFFGLFPEYKDNELFLTGESYAGVYIPTLAVLVMQDPSMNLQGLAVGNGLSCYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYNNKDPECVTNLQEVSHIVGSSGLNVYNLYAPCAGGVPSHPRWALPCVPWANPSPIWRLRHSSPDLACRYEKDTVVVQDLGNIFTRLPPKRMWHQALLHSAGKVRLDPPCTNTTAASTYLNYPLVRKALHIPKQLPRWDVCNFLVNIQYRRLYQTMCSQYLKLLAAQKYRILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGDGGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPQAALTMFSRFLNKQPY*