Part of scaffold_242 (Scaffold)

For more information consult the page for scaffold_242 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TMC5 ENSTTRG00000002453 (Bottlenosed dolphin)

Gene Details

transmembrane channel-like 5

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002298, Bottlenosed dolphin)

Protein Percentage 78.41%
cDNA percentage 82.75%
Ka/Ks Ratio 0.59292 (Ka = 0.0599, Ks = 0.101)

TMC5 ENSBTAG00000002097 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037277, Cow)

Protein Percentage 76.57%
cDNA percentage 83.17%
Ka/Ks Ratio 0.46372 (Ka = 0.1537, Ks = 0.3314)

TMC5  (Minke Whale)

Gene Details

transmembrane channel-like 5

External Links

Gene match (Identifier: BACU012915, Minke Whale)

Protein Percentage 85.38%
cDNA percentage 89.3%
Ka/Ks Ratio 0.61115 (Ka = 0.1014, Ks = 0.166)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2424 bp    Location:633331..672477   Strand:+
>bmy_06283
ATGTCTGCCTACAGGAATAATGCTTATGAGGAGGATCCAGATTACCCTGACTATTATGGGTCTCAGAACCAGACTCGGGGGTATTTGAAAACTCAGGATTATCCAGATTCACCAGGTCCTCTGAACAACTCAGATGACCCCAGCACCAGGAGCAACCCATACTCTGCACACTCCAGAACAAGTCCAGACTATCCTGGGTCTCTAGCAGAACCAGATTATCCTGGATCTTGGAGTAATCCAGACTACCCTGGCACCAGGAGCAATCCATACTCTGCAGGGTCCAGAAGTCCAGACAATCCCAAATCTTTGGCAGAGCCAGATTATATTGGATCTTGGAGCAATCCATATCACCCAGGCTCATCCAGAGAGCCAGACTACTTTGAATCTCAACGAAATCCTGATTTTGCAGGTTCCAAAGGCAATGGAAACTATGCAGGCTCCAGAACAAATCCAGATTATCTCGACTCCTTGGGAGAACCAGACTACGCTGGAGCTCAGGGAAACTCTAACTATTCTGGCCCCAGAGCCAATTCCAACCATCCAGACTCCAGAAGGAATCCAGAATATGCTGGTTCCAGAATCAATCCATACATAGACACTCTGGGAGAGCCTGATTATCCAGATGCTGAGAACCAATCTAACTCTCCAAACTTTTTTGGGGAACCAGACTATCCTGGAGCTGAGGACTATCGGAACTCTACAAAGTTCTGGGGGGACCCTGATTACCCAGGTGCTGAGAATGATCATGATTATGGCTCTTCAGAGAACCCGGAAATGACCAGGGAAATGCTCAGCAGAGCATCTTCAATCCAGCCCTCATTWCACCGTGAGGGTGAAGACCCCTTGGGCATCCTTGGGAGAAAGGATGGAGATTATCCTGAAAGCATTGAAATGAAATCCAGGGAGATGGCAAATCCGTACAGCCCCTCTGTGCCAGGTGCTCCTGGCAATGGCTATGTGAACCCTGCTTATGTGGGTGACAATGGCCTCAGCCAAGCTTATGGAGACCCACCCTTGTCTGGACATGATTGGCACACGTCACCCCAAGGACAAAAGTTAATCGCATCTCTGATACCCATGACATCTAGAGACAGAATTAAAGCCATCAGGAATCAGCCAAGGACCATGGAAGAGAAAAGGAACCTTAGTTCCATCAGCCTGTGGCAGAAGACGCTCAAGGTCATCGGAGGCAAGTTCGGCACCAGCGTCCTCTCCTATTTCAACTTTCTGAGGTGGCTTTTGAAGTTCAACATTTTCTTGTTCATTGTGACCTTCAGCTTCATCATAATCCCTCAGTTAACCATGGCCGAGAAGAACCACCTCCAATTCACTGGACTGGAATTTTTAACCGGGGCTGGTTATTTTAGGGACACAGTGATGTACTACGGCTTTTACACCAATACTACAACCCAGCATGGGAACAGCGGGACCTCCTACAACATGCAGCTGGCCTACATCTTCACAATCGGAGCGTGCTTGGTTGTCTGCTTTTTCAGTTTGCTCTTCAGCATGGCCAGGTATTTCCGGAACAACTTCATTAACCCACACATTTACTCCAGAAGGATTGCTAAACTCATCTTTTGCTGGGATTTCACCGTCACTCATGAAAGYGCTGTRAAGCTGAAACAGAAGAATCTGAGCACTGAGATAAGGGAGAACCTGTCAGAAATCCGTCAGGAGAAAGTCAAGTTAACACTCAATCAGCGGTTGATTCGCTTCGCTGCCCACCTGGCAGCCTGGGTTGTCTCTACTGGAGTGGGCATTGCCTGCTGTACAGCCGTTTATTACCTGGCTGAGAACAACTCAGAGTTCCTGGCGAACCACAGGAACCCCGGGGCRGTACTGTTACTGCCTTTCGTTGTGTCCTGCATCAACCTGGTCGTGCCTCGCTTCTACTCCATGTTCAGGCTGGTGGAGCACTATGAGATGCCAAGGCATGAAGTCTCCATCCTCCTGATCCGGAGGGAGTTGATGGTTTGGGTACTAAACTCATTACATTTTCACAGAATCATTGGGATGCACCTTATCCCAAGTCTTGGCTTACAGGAGTTTGACATTGCCAGGAATGTCCTAGAACTGATCTACGCACAAACTCTGGTGTGGATTGGAATCTTCTTCTGCCCTCTGCTACCCTTTATCCAAATGATTACTCTCTTCATCATGTTTTACGTCAAAAATGTGAGTCAGTCTGAAGGTGGAACCAATCGGCTTTGCTCAGTCCCATGTGACACAGTGGTGGCTGGAAGAGGGCAAAGACAAAATGTTCCTGATAGAAAAGTTGATCAAGCTGCAGGATATGGAGAAGAGAGCAAGCCCCACCTTGTTTACGCCAGAAAGGAGAGACGTGGAGGTGAGGCTGGAAGCCACCTTGGGATCCCTGTGACACAGATGTGCCCTCCTGGGAAAAGTGCATCAGGGAACTAG

Related Sequences

bmy_06283T0 Protein

Length: 808 aa      View alignments
>bmy_06283T0
MSAYRNNAYEEDPDYPDYYGSQNQTRGYLKTQDYPDSPGPLNNSDDPSTRSNPYSAHSRTSPDYPGSLAEPDYPGSWSNPDYPGTRSNPYSAGSRSPDNPKSLAEPDYIGSWSNPYHPGSSREPDYFESQRNPDFAGSKGNGNYAGSRTNPDYLDSLGEPDYAGAQGNSNYSGPRANSNHPDSRRNPEYAGSRINPYIDTLGEPDYPDAENQSNSPNFFGEPDYPGAEDYRNSTKFWGDPDYPGAENDHDYGSSENPEMTREMLSRASSIQPSXHREGEDPLGILGRKDGDYPESIEMKSREMANPYSPSVPGAPGNGYVNPAYVGDNGLSQAYGDPPLSGHDWHTSPQGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLSSISLWQKTLKVIGGKFGTSVLSYFNFLRWLLKFNIFLFIVTFSFIIIPQLTMAEKNHLQFTGLEFLTGAGYFRDTVMYYGFYTNTTTQHGNSGTSYNMQLAYIFTIGACLVVCFFSLLFSMARYFRNNFINPHIYSRRIAKLIFCWDFTVTHESAVKLKQKNLSTEIRENLSEIRQEKVKLTLNQRLIRFAAHLAAWVVSTGVGIACCTAVYYLAENNSEFLANHRNPGAVLLLPFVVSCINLVVPRFYSMFRLVEHYEMPRHEVSILLIRRELMVWVLNSLHFHRIIGMHLIPSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMITLFIMFYVKNVSQSEGGTNRLCSVPCDTVVAGRGQRQNVPDRKVDQAAGYGEESKPHLVYARKERRGGEAGSHLGIPVTQMCPPGKSASGN*