Part of scaffold_237 (Scaffold)

For more information consult the page for scaffold_237 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COPA ENSTTRG00000001838 (Bottlenosed dolphin)

Gene Details

coatomer protein complex, subunit alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001729, Bottlenosed dolphin)

Protein Percentage 99.01%
cDNA percentage 98.42%
Ka/Ks Ratio 0.15936 (Ka = 0.0068, Ks = 0.0424)

COPA ENSBTAG00000004333 (Cow)

Gene Details

Coatomer subunit alpha Xenin Proxenin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005672, Cow)

Protein Percentage 98.02%
cDNA percentage 95.24%
Ka/Ks Ratio 0.07465 (Ka = 0.0116, Ks = 0.1559)

COPA  (Minke Whale)

Gene Details

coatomer protein complex, subunit alpha

External Links

Gene match (Identifier: BACU003875, Minke Whale)

Protein Percentage 98.79%
cDNA percentage 98.75%
Ka/Ks Ratio 0.27525 (Ka = 0.0077, Ks = 0.028)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2733 bp    Location:627667..607938   Strand:-
>bmy_06316
ATGCATTTAGCTAATTCTTTCCTCCTTTTTCCCTGTGGCCCAGGCCATGATGGTGGCATGATTGTATTTAAATTGGAACGGGAACGGCCAGCCTATGCTGTTCATGGCAATATGCTTCATTATGTCAAGGACCGATTCTTACGTCAGTTGGATTTCAACAGCTCCAAAGATGTAGCTGTGATGCAGTTGCGGAGTGGTTCCAAGTTCCCAGTGTTCAACATGTCGTACAATCCAGCAGAAAATGCAGTCCTACTGTGTACAAGAGCCAGTAATTTAGAGAATAGTACCTATGACTTGTACACCATCCCCAAGGATGCCGACTCCCAGAATCCTGATGCTCCTGAAGGGAAACGATCCTCAGGCCTGACAGCTGTTTGGGTTGCTCGCAATCGGTTTGCTGTCCTAGATCGGATGCATTCGCTTCTGATCAAGAATCTGAAGAATGAGATCACCAAAAAGGTACAGGTGCCCAACTGTGATGAGATTTTTTATGCTGGCACAGGCAACCTCCTGCTTCGAGATGCAGAATCCATCACGCTCTTTGACGTACAGCAGAAGCGGACTCTGGCATCTGTGAAGATTTCCAAGGTGAAATATGTTATCTGGTCAGCAGACATGTCCCATGTAGCACTACTGGCCAAACATGCCATTGTGATCTGTAACCGCAAACTGGAGGCTCTATGTAACATTCATGAGAACATTCGTGTCAAGAGTGGGGCCTGGGATGAGAGTGGGGTATTTATCTATACCACAAGCAACCACATCAAATATGCTGTCACCACTGGGGACTATGGGATCATCCGAACTCTGGATTTACCTATCTATGTCACACGGGTGAAGGGCAACAATGTATATTGCCTAGATAGAGAGTGTCGTCCTCGGGTGCTCACCATTGATCCAACTGAGTTCAAGTTCAAGCTGGCCCTGATCAACAGAAAATATGATGAGGTACTACACATGGTAAGGAACGCCAAACTTGTAGGCCAGTCTATCATTGCGTATCTCCAGAAGAAGGGATATCCTGAAGTGGCACTGCATTTCGTCAAGGATGAGAAAACTCGCTTTAGTCTGGCACTGGAGTGTGGAAACATTGAGATTGCTCTGGAAGCAGCCAAAGCACTGGATGACAAGAATTGCTGGGAAAAGCTGGGAGAAGTGGCCTTACTACAGGGGAACCACCAGATTGTGGAAATGTGTTATCAGCGCACCAAAAACTTTGACAAACTTTCCTTCTTGTACCTTATCACTGGCAATCTAGAGAAACTTCGCAAGATGATGAAAATTGCTGAGATCCGAAAGGACATGAGTGGCCATTATCAGAATGCCCTCTACCTGGGAGACGTGTCAGAGCGGGTACGGATCCTGAAGAACTGTGGGCAAAAGTCACTGGCCTATCTCACAGCTGCTACCCATGGTTTAGATGAAGAAGCTGAGAGCCTGAAGGAGACATTTGACCCAGAGAAGGAGGCAATCCCAGACATTGACCCTAATGCCAAGCTGCTTCAGCCACCTGCACCTATCATGCCATTGGATACCAATTGGCCCTTATTGACTGTGTCCAAAGGGTTCTTTGAAGGCTCCATTGCCAGCAAGGGGAAGGGAGGAGCACTGGCTGCTGACATTGACATTGACACTGTTGGTACTGAGGGCTGGGGAGAGGATGCGGAGCTGCAGCTGGACGAAGATGGGTTTGTGGAGGCTACAGAAGGTTTGGGGGATGATGCTCTTGGCAAGGGACAGGAAGAAGGAGGTGGCTGGGATGTGGAAGAAGATCTGGAGCTCCCTCCTGAGCTGGATATACCCCCTGGTGTAGCTGGTGGGGCTGAGGATGGGTTCTTTGTGCCCCCCACTAAGGGAACCAGCCCAACTCAGATCTGGTGCAATAACTCTCAGCTTCCAGTTGATCACATCCTGGCAGGCTCTTTTGAAACAGCCATGCGGACCTATGCCCGAGGCCGTACCACCTATCAGGCTCTGCCCTGCCTGCCCTCCATGTATGGCTACCCTAATCGCAATTGGAAGGATGCAGGGCTGAAGAATGGTGTACCAGCTGTGGGCCTGAAGCTTAATGACCTCATCCAACGGTTGCAACTGTGCTACCAGCTCACCACAGTGGGCAAGTTTGAGGAGGCTGTGGAAAAATTCCGTTCCATTTTACTCAGTGTGCCACTTCTTGTTGTGGACAATAAACAGGAGACTGCAGAGGCTCAGCAGCTCATCACCATTTGCCGTGAGTACATTGTGGGTTTGTCCATGGAGATAGAAAGGAAGAAGCTGCCCAAAGAGTCTCTAGAACAGCAGAAGCGCATCTGTGAGATGGCAGCCTATTTCACCCACTCAAACCTGCAGCCAGTGCACATGATCCTGGTGCTACGTACAGCCCTCAACCTCTTCTTCAAGCTCAAGAACTTTAAGACTGCTGCCACCTTTGCTCGGCGCCTGTTAGAACTCGGGCCCAAGCCGGAGGTGGCTCAACAGACCCGCAAAATCCTGTCTGCCTGTGAGAAGAACCCCACAGATGCCTACCAGCTCAATTATGACATGCACAACCCTTTTGACATCTGTGCTGCATCTTATCGGCCCATCTACCGTGGAAAGCCAGTGGAGAAATGTCCACTTAGTGGGGCCTGCTATTCGCCTGAGTTCAAGGGTCAGATCTGCAGGGTCACTACAGTGACAGAGATTGGCAAAGATGTGATTGGTTTAAGGATCAGCCCTCTGCAGTTTCGCTAA

Related Sequences

bmy_06316T0 Protein

Length: 911 aa      View alignments
>bmy_06316T0
MHLANSFLLFPCGPGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDAESITLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLEALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDYGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDPEKEAIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPELDIPPGVAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQETAEAQQLITICREYIVGLSMEIERKKLPKESLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR*