Part of scaffold_237 (Scaffold)

For more information consult the page for scaffold_237 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CD48 ENSTTRG00000002661 (Bottlenosed dolphin)

Gene Details

CD48 molecule

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002495, Bottlenosed dolphin)

Protein Percentage 80.47%
cDNA percentage 90.7%
Ka/Ks Ratio 2.46404 (Ka = 0.1231, Ks = 0.0499)

CD48 ENSBTAG00000011238 (Cow)

Gene Details

CD48 antigen precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014924, Cow)

Protein Percentage 72.56%
cDNA percentage 81.71%
Ka/Ks Ratio 0.65253 (Ka = 0.1952, Ks = 0.2992)

CD48  (Minke Whale)

Gene Details

CD48 molecule

External Links

Gene match (Identifier: BACU003869, Minke Whale)

Protein Percentage 86.32%
cDNA percentage 92.81%
Ka/Ks Ratio 0.95106 (Ka = 0.0761, Ks = 0.08)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 648 bp    Location:1020511..1014377   Strand:-
>bmy_06322
ATGTCCTGTTATGAGAATTATTCAAAATATGCCGTCTCCGGCAGCAACGTGAGTCTGCCAATCTCCAGTTTGCCGGGGAACTACACATCACTCACCTGGTTTTATACTACTGACCAGAAGATTGTAGAATGTGAATTCCGTCAGCCTAAATACTTCAATACTAAATTTAAGGACAGGGCCAAGCTTGATCTTCAAAGTGGCACACTGCACATCCATAATGTCCAGAAGGAGGACAGCAGCACTTACCTCCTGATGGTGCTGAAGGACACTGGGGACGAGGACGAATGGAAGATCTCACTGGTGGTGCTTGACCCTGTACCAAAGCCTGTCATAAACGTCAACAAGACACAGGAAGTGAACAAGTGTTACCTAACCCTGTCCTGTGTGACCCAGGACCAGCCTGTAAACTACACCTGGTATGCAGAGTCCCTTCCAAAAGAGTTCCAGAGCAGTGTGCTTGAAGTGACCCATGCACCACAAAACTACTCCAGGTCTTACACCTGCCAAGTCAGCAATCCTGTGAGCAGCCAAAATAGCACAGTCAACTTCACTTCACCCTGTGTACAGGCCTCATCCTCTGGAGTAGCTTGGACTGCAACTTGGCTAGTGATCATGGTAACCACTGTTCTTGGTCTCCTATGGATCTGA

Related Sequences

bmy_06322T0 Protein

Length: 216 aa      View alignments
>bmy_06322T0
MSCYENYSKYAVSGSNVSLPISSLPGNYTSLTWFYTTDQKIVECEFRQPKYFNTKFKDRAKLDLQSGTLHIHNVQKEDSSTYLLMVLKDTGDEDEWKISLVVLDPVPKPVINVNKTQEVNKCYLTLSCVTQDQPVNYTWYAESLPKEFQSSVLEVTHAPQNYSRSYTCQVSNPVSSQNSTVNFTSPCVQASSSGVAWTATWLVIMVTTVLGLLWI*