Part of scaffold_237 (Scaffold)

For more information consult the page for scaffold_237 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP21 ENSTTRG00000009198 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 21

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008720, Bottlenosed dolphin)

Protein Percentage 96.68%
cDNA percentage 97.54%
Ka/Ks Ratio 0.59814 (Ka = 0.0175, Ks = 0.0292)

BT.24990 ENSBTAG00000021893 (Cow)

Gene Details

ubiquitin carboxyl-terminal hydrolase 21

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029184, Cow)

Protein Percentage 97.06%
cDNA percentage 96.27%
Ka/Ks Ratio 0.17367 (Ka = 0.0158, Ks = 0.091)

USP21  (Minke Whale)

Gene Details

ubiquitin specific peptidase 21

External Links

Gene match (Identifier: BACU003858, Minke Whale)

Protein Percentage 94.18%
cDNA percentage 95.24%
Ka/Ks Ratio 0.67256 (Ka = 0.0432, Ks = 0.0643)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2169 bp    Location:1366618..1377917   Strand:+
>bmy_06339
ATGGCGGATGAGGCCACCCGGCGTGTCGTGTCTGAGATCCCGGTGCTGAAGACCAATGCCGGACCTCGAGATCGGGAGTTGTGGGTGCAGAGACTCAAGGAGGAATATCAGTCTCTTATCCGGTACGTGGAGAACAACAAGAATGCAGACAATGATTGGTTCCGACTGGAGTCCAACAAGGAAGGGACTCGGTGGTTTGGAAAATGCTGGTACATCCATGACCTCCTCAAATATGAGTTTGACATCGAGTTTGACATTCCTATCACATATCCCACTACTGCTCCAGAAATTGCAGTCCCTGAACTGGATGGAAAAACAGCAAAGATGTACAGGGGTGGCAAAGTATGCCTGACTGATCACTTTAARCCTTTGTGGGCCAGGAATGTGCCTAAGTTTGGACTAGCTCATCTCATGGCTCTGGGGGTCCAGCCTGTGGTGTCCACAATGCCCCAGGCTTCTGAGCACCGCCTGGGACGGACCCGAGAGCCACCTCTTAATGTCCAGCACCGAGTGGGATCCAAGCTACCATTTGCTCCCAGGGCCCGGAGCAAGGAGCGCCGAAACCCAGCCCCTGGGCCGAACCCTATGTTACGACCTCTGCCTCCTAGGCCAGCTCCCCCTGAGGAACGGCTCAAGAAACTGGAGCTGGGACGGGGACGGACCTCAGGCCCTCGTCCCAGAGGCCCGCTTCGGGCAGACCATGGAGTTCCCCTGCCTGGCTCACCACCCCCAACTGTGGCTCTGCCTCTCCCATCAAGGACCAACCTAGCCCGTTCCAAGTCTGTGAGCAGTGGGGACTTGCGTCCAATGGGGATTGCCTTGGGAGGGCACCGCGGCACTGGAGAGCTAGGGGCTGCACTGAGCCGCTTGGCTCTCCGGCCTGAGCCACCCACTTTGAGACGTAGCACCTCTCTCCGCCGCCTTGGGGGCTTTCCTGGGCCACCCACCTTGCTCAGCATACGGACAGAGCCCCCTACTTCCCATGGCTCCTTCCACGTGATATCTGCCCGGCCCTCTGAACCTTTCTACTCCAATGACAAGATGTGCTTCCTGAATGCTGTGCTACAGTGTTTGAGCAGCACTCGGCCTCTTCGGGACTTCTGTCTGCGAAGGGACTTCCGGCAAGAGGTGCCCGGAGGGGGCCGAGCCCAAGAGCTCACTGAAGCCTTTGCAGATGTGATTGGTGCCCTGTGGCACCCTGACTCCTGTGAAGCTGTGAATCCTACTCGATTCCGAGCTGTCTTCCAGAAATACGTTCCCTCCTTCTCTGGATACAGCCAGCAGGATGCCCAAGAGTTTCTGAAGCTCCTCATGGAGCGGCTACACCTCGAAATCAACCGACGAGGCCGCCGGGCTCCGCCAGTCCTGGCCAATAGTCCAGCTCCCTCCCAACCCCGCCGTGGAGGGGCTCTACTAGAAGAACCTGAGTTAAGCGATGACGACCGAGCCAACCTAATGTGGAAGCGTTACCTGGAGCGAGAGGACAGCAAGATTGTGGACCTGTTTGTGGGCCAGTTGAAAAGTTGTCTCAAGTGCCAGGCCTGTGGGTATCGCTCCACGACCTTCGAGGTTTTTTGTGACCTGTCCCTGCCCATCCCCAAGAAAGGATTTGCCGGGGGCAAGGTGTCTCTGCGGGATTGTTTCAGCCTTTTCACCAAGGAAGAAGAGCTAGAATCGGAGAATGCCCCAGTATGTGTGTGTGACCAATGTCGGCAGAAAACACGAAGTACCAAAAAGTTGACAGTACAAAGATTCCCCCGAATCCTCGTGCTCCGGAGGGGAGTGGACAACATTCACTTCCTCAGCCCCCCTCAGAGGCACTCTGCCTCCCAAATTCTCCTTAACCAGAGCTTAGATCTTAATCGATTTTCTGCCTCCCGAGGCTCCATCAAGAAAAGTTCAGTAGGTGTAGACTTCCCGCTGCAGCGACTGAGCCTAGGGGACTTTGCCAGTGACAAAGCCGGAAGCCCCGTATATCAGCTGTATGCCCTTTGCAACCACTCGGGCAGTGTCCACTATGGCCACTACACAGCCCTGTGCCGGTGCCAGACTGGTTGGCATGTCTACAATGACTCTCGTGTCTCCCCTGTCAGTGAAAACCAGGTGGCATCCAGTGAGGGCTACGTGCTGTTCTACCAACTGATGCAGGAGCCACCCCGGTGCCTGTGA

Related Sequences

bmy_06339T0 Protein

Length: 723 aa      View alignments
>bmy_06339T0
MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKVCLTDHFKPLWARNVPKFGLAHLMALGVQPVVSTMPQASEHRLGRTREPPLNVQHRVGSKLPFAPRARSKERRNPAPGPNPMLRPLPPRPAPPEERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLLSIRTEPPTSHGSFHVISARPSEPFYSNDKMCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPVLANSPAPSQPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCVCDQCRQKTRSTKKLTVQRFPRILVLRRGVDNIHFLSPPQRHSASQILLNQSLDLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL*