Part of scaffold_243 (Scaffold)

For more information consult the page for scaffold_243 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CPT1C ENSTTRG00000005539 (Bottlenosed dolphin)

Gene Details

carnitine palmitoyltransferase 1C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005228, Bottlenosed dolphin)

Protein Percentage 89.74%
cDNA percentage 89.03%
Ka/Ks Ratio 0.09398 (Ka = 0.0072, Ks = 0.0763)

CPT1C ENSBTAG00000012205 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016188, Cow)

Protein Percentage 93.14%
cDNA percentage 93.0%
Ka/Ks Ratio 0.13854 (Ka = 0.033, Ks = 0.2379)

CPT1C  (Minke Whale)

Gene Details

carnitine palmitoyltransferase 1C

External Links

Gene match (Identifier: BACU011068, Minke Whale)

Protein Percentage 98.79%
cDNA percentage 98.38%
Ka/Ks Ratio 0.12224 (Ka = 0.0061, Ks = 0.0499)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2400 bp    Location:315000..294947   Strand:-
>bmy_06368
ATGTTGGATAGTCGGAGGCGGACAGGTGCTCCGGAGGCCCATCGACCAAGTCTTGGACTCACAGTCACTGGGATTGGACATATGCAAGCGGGAGGCTTGAGTCCGGCCGTGGGCTTCCGACCCTCGCTGACTTCGGACGCGGGAGAAATGGAGCTCAGTGCCCCGATGTTGCAGGAGATCTACCTCTCCGGACTGCGCTCTTGGAAAAGGCATCTGTCCCGTTTCTGGCTTGCCTGGTTCCTCCAGCTGGATCCTTCCTTAGGACTGATGGAGAAAATCAAAGAGTTGCTGCCAGACTGGGGTGGACAGCATCACAGGCTTCGGGGGGTCCTGGCGGCCGCGCTGTTTGCTTCGTGTCTGTGGGGAGCTCTGATCTTCACGCTTCATGTGGCCCTGAGGCTACTTCTGTCCTACCACGGCTGGCTCCTCCAACCCCACGGAGCCATGTCCTCACGCACCAAGACCTGGCTGGCCCTGGTTCGCATCTTCTCCGGCCGCCACCCAATGCTCTTCAGTTACCAACGCTCCCTGCCGCGTCAGCCTGTGCCCTCCGTGCAGGACACCGTGCGCAAGTATCTGGAGTCTGTCCGACCCGTCCTCTCCGACGAGGACTTCGACTGGACCGCGGCCCTAGCCCGGGAATTCCTGAGGCTGCAGGCGTCACTGCTGCAGTGGTACCTTCAGCTCAAGTCCTGGTGGGCATCCAATTACGTCAGTGACTGGTGGGAAGAATTCGTGTACCTGCGCTCCCGGAACTCACTGATGGTGAATAGCAACTATTATATGATGGACTTCCTGTATGTCACGCCCACTCCCGTGCAGGCCGCCCGTGCGGGGAACGCGGTCCACGCCCTCCTCCTGTACCGCCACCGCCTGAACCGCCAGGAGATCCTGCCGACTTTGCTGATGGGAATGCGGCCCTTGTGCTCTGCCCAACACGTGGCCGTCTTCCACCGGGGCCGATTCTTCCGCGTGGGGACCCACTCCCAAAGCGGCCTGCTTTCCCCGCGGGCCTTGGAGCAGCAGTTCCAGCGAATCCTGGACGACCCCTCTCCTGCCTGCCCCCACGAGGAGCATCTGGCGGCCTTGACCGCTGCTCCGAGGGACATGTGGGCCCAGGTGCGGAGGTCCCTGAAGACCCAGGCCCAGGAGGCCCTGGAGGCCGTCGAAGGGGCTGCTTTCTTTGTATCACTCGACTCTGAGCCCGCGGGGCTCACCAGGGAGGACCCCGCAGCTTCCTTAGACGCCTACGCCCACGCCCTGCTGGCCGGCAGGGGCCACGACCGCTGGTTTGACAAATCCTTCTCCTTAATCGTCTTCTCCAACGGGAAGCTGGGCCTCAGCGTGGAGCACTCGTGGGCTGACTGCCCCATCTCAGGACACATGTGGGAGAAGGGACTTAAGAGGTCCCTGGTTAGATGTCCCTTGGTCCAGAGGGAGGAAGGGACTCTGACAGCTTCCATTTGTACACAGTTCACTCTGGCCACAGAATGCTTTCAGCTGGGCTACTCGGCAGACGGTCACTGCAAGGGACACCCTGACCCCTCACTGCCCCAGCCCCAGCGGCTGCACTGGGACCTTCCAGACAAGATGCATCTATCCATCTCTCTAGCCCTGAGGGGAGCCAAGACCTTGTCTGGAAACATCGACTGCCACGTCTTCCCCTTCTCCCACTTCGGCAAGAGCTTCATCAAACGCTGCCACCTCTCTTCAGACAGCTTCATCCAGATGGCTTTGCAGCTGGCCTACTTTCGGGACAGGGGTCAATTCTGCCTGACTTATGAGTCGACCATGACTCGCTTGTTCCTGGAAGGGCGGACAGAGACGGTGCGTTCTTGCACGAGGGAGGCCTGCAACTTTGACCCACAGTGCCTCGCCCTGTTCCGCTTGGCGGTGGACAAGCACCAAGCCCTGCTGAAGGCAGCGATGAGTGGACAGGGGGTCGACCGCCACCTCTTTGCTCTCTACATCGTGTCCCAGTTCCTCCACCTGCAGTCTCCCTTCCTGGACCAGGTTCGCTCGGAGCAGTGGCAGCTGGCCACCAGCCAGATTCCTGTTCAGCAAATCCACCTGTTCGACGTCCACAGTTACCCCGACTATGTTTCCTCTGGTGGTGGATTCGGGCCTGCTGATGACCATGGTTATGGTGTTTCCTACATCTTCATGGGGGATGATGTGATCACCTTCCACATCTCCAGCAAAAAATCAAGCACAAGAACGGACTCCCACCGGCTGGGGCAGCACATCGAGGATGCATTGTTGGACGTGGCCGCCCTTTTCCAGGAGGGGCAGCGTCTTAAGCGCAGAGGTTTAGCGGAGGAGGGCTCGGAGCACAGCCGTGACTCTCTCCCCTGCCATACCAGGGGCTCCAGGGCACCCACGACAGCCACTAACTTTTGA

Related Sequences

bmy_06368T0 Protein

Length: 800 aa      View alignments
>bmy_06368T0
MLDSRRRTGAPEAHRPSLGLTVTGIGHMQAGGLSPAVGFRPSLTSDAGEMELSAPMLQEIYLSGLRSWKRHLSRFWLAWFLQLDPSLGLMEKIKELLPDWGGQHHRLRGVLAAALFASCLWGALIFTLHVALRLLLSYHGWLLQPHGAMSSRTKTWLALVRIFSGRHPMLFSYQRSLPRQPVPSVQDTVRKYLESVRPVLSDEDFDWTAALAREFLRLQASLLQWYLQLKSWWASNYVSDWWEEFVYLRSRNSLMVNSNYYMMDFLYVTPTPVQAARAGNAVHALLLYRHRLNRQEILPTLLMGMRPLCSAQHVAVFHRGRFFRVGTHSQSGLLSPRALEQQFQRILDDPSPACPHEEHLAALTAAPRDMWAQVRRSLKTQAQEALEAVEGAAFFVSLDSEPAGLTREDPAASLDAYAHALLAGRGHDRWFDKSFSLIVFSNGKLGLSVEHSWADCPISGHMWEKGLKRSLVRCPLVQREEGTLTASICTQFTLATECFQLGYSADGHCKGHPDPSLPQPQRLHWDLPDKMHLSISLALRGAKTLSGNIDCHVFPFSHFGKSFIKRCHLSSDSFIQMALQLAYFRDRGQFCLTYESTMTRLFLEGRTETVRSCTREACNFDPQCLALFRLAVDKHQALLKAAMSGQGVDRHLFALYIVSQFLHLQSPFLDQVRSEQWQLATSQIPVQQIHLFDVHSYPDYVSSGGGFGPADDHGYGVSYIFMGDDVITFHISSKKSSTRTDSHRLGQHIEDALLDVAALFQEGQRLKRRGLAEEGSEHSRDSLPCHTRGSRAPTTATNF*