Sequence detailsbmy_06372 (Coding sequence)

Part of scaffold_243 (SequenceType object (1))

For more information consult the page for scaffold_243 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCAF1ENSTTRG00000005527 (Bottlenosed dolphin)

Gene Details

SR-related CTD-associated factor 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005216, Bottlenosed dolphin)

Protein Percentage 97.99%
cDNA percentage 97.51%
Ka/Ks Ratio 0.12748 (Ka = 0.0085, Ks = 0.0667)

SCAF1ENSBTAG00000006612 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008680, Cow)

Protein Percentage 97.03%
cDNA percentage 93.26%
Ka/Ks Ratio 0.04168 (Ka = 0.013, Ks = 0.3131)

SCAF1 (Minke Whale)

Gene Details

SR-related CTD-associated factor 1

External Links

Gene match (Identifier: BACU011072, Minke Whale)

Protein Percentage 99.41%
cDNA percentage 98.97%
Ka/Ks Ratio 0.0964 (Ka = 0.0032, Ks = 0.0331)

Additional orthologs identified in other species via the OPTIC pipeline.

SCAF1 (Human)   Scaf1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2547 bp    Location:359508..346683   Strand:-
Raw sequence 
>bmy_06372
ATGGAGGAAGAAGATGAGTCTCGAGGGAAGACAGAGGAGTCAGGCGAGGATCGGGGTGATGGTCCGCCAGACAGAGACCCTTCGCTTTCTCCTTCTGCTTTTATCTTGCGGGCCATTCAGCAGGCTGTGGGAAGTTCCCTGCAGGGGGACCTGCCAAATGATAAAGATGGTTCTCGGTGTCATGGCCTTCGATGGAGGCGCTGTCGGAGCCCACGTTCAGAGCCCCGTTCCCAGGAATCAGGGGGGACTGACACGGCTTCTGTGTTGGACGTGGCTGCCGATGGCCTCCTCGCGGGGCTGGTGAGCATCCTGGATCCCCCAGATACCTGGGTTCCCAGCCACCTGGACCTGCGGCCTGGCGAAAGCGAGGACATGCTGGAGCTGGTGGCCGAGGTCCGAATTGGGGACAGGGATCCAGTCCCTCTTCCCGTACCCAGCCTGCTGCCCCGTGTCAGGGCCTGGAGGACGGGCAAAACGGTTTCTCCACAGCGCGAGCGGCACCGCGGCAAGCACCGGGATGGCGGCGGCAGCAAGAAGAAGAAGAAGCGGTCGCGGTCCCGGGGCGAGAAGCGGTCTGGGGACAGTGAGAAGGGCCCTGCCCCGGCCCAGCCGCCCTCCGGCTCCACCTCCTTGGGTGGAGAGCGCGACAGCCGCCGCCGGGGGGCCGTGCCGCCCTCCATCCAGGACCTCACGGACCACGATCTCTTTGCCATCAAGCGGACCATCACCGTGGGCCGGCTGGACAAGCCTGACCCCCGCGGCCCCTCACCGGCTCCGGCCTCATCGCCCAAGCGCGAGGTCCTATACGACTCCGAGGGACTGAGCGCCGAGGAGCGGGGAGGCAAGAGCAGTGAGAAGGACCGGCGCCGCTCTGGGGCTGCCTCCTCCTCCTCTTCCTCCCGGGAGAAGGGATCGCGGCGGAAGGCACTGGACGGGGGGGATCGGGACCGGGACAGGGACAGAGAGAGGGACAGAGACAGGTCATCCAAGAAGGCCCGGCCCCCCAAGGAGTTGGCGCCCTCCTCAGGGCCCCCGCCAAAGCCACCTGTCAGCAGCGGCTCAGGCTCCTCGTCCTCGTCGTCCTCCTCATCCTCCCGGAAGGTGAAGCTACAGTCCAAGGTGGCCGTGCTGATCCGAGAGGGTGTCAGCAGCACTACACCAGCCAAGGAGGCCACGTCTGCTGGCCTGGGCTCCATCGGAGTCAAGTTCAGCCGAGACCGAGAGAGCCGCTCCCCCTTCCTCAAGCCGGATGAGCGGGCCCCTACTGAGGTGGCCAAAGCAGCTCAGGGCAGCACCAAGCCCAAAAAGACCAAGGTCAAGGCCAAGGCTGGGGCCAAGAAAGCCAAGGGGACCAAGGGAAAGACCAAGCCATCCAAGACCAGGAAAAAGATCCGCAGCGGTGGGGGCAGCAGCGGGGGCAGCAGTGGCCCTGTGACACTGAAGAAGTCCAAGGCGGATAGCTGCAGCCAGGCGGCGGGAGCCAAAGGGGCCGAGGAGACTTCCTGGTCCGGGGAAGAGCGGGCAGCGAAGGCCCCTAGCACCCCACCCCCCAAGGCGGCCCCTCCACCCCCTGCTCTCACGCCCGACTCACAGACTGTGGATAGCAGCTGCAAGACACCTGAGGTCTCTTTCCTGCCAGAAGAGGCCACTGAGGAGGCTGGAGTCCGAGGTGGGGCGGAGGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCCGGCCACCACCACGGCCACCAGCACGGCTGCTGCCGCTCCCAGCACCGCCCCTAGTGCGGGGTCCACGGCTGGTGACTCGGGGGCGGAGGATGGGCCAGCCCCCCGTGTCTCCCAGCTGCCCACACTGCCCCCACCCATGCCCTGGAGCCTGCCCGCTGGTGTAGACTGCACTACCAGCGGTGTCCTGGCCTTGACTGCACTTCTCTTCAAGATGGAAGAAGCCAATCTGGCAAGCCGAGCAAAGGCCCAGGAGCTGATCCAGGCCACCAACCAGATCCTCAGCCACAGGAAGCCACCCTCAAGTCTGGGGGTGACGCCAGCTCCTGTGCCCACCTCTCTGGGTCTGCCCCCTGGCCCCTCCAGCTACCTGCTCCCTGGCAGCCTCCCCCTGGGGGGCTGTGGCTCTACCCCTCCCACGCCCACTGGGCTGGCTGCAGCGTCTGACAAGAGAGAGGGCAGCAGCAGCTCCGAGGGACGTGGTGACACAGACAAGTATCTGAAGAAGCTGCACACGCAGGAGCGGGCAGTAGAGGAGGTGAAGCTGGCCATCAAGCCGTATTATCAGAAGAAGGACATCACCAAGGAGGAGTACAAGGACATCCTGAGGAAGGCCGTCCACAAGATCTGCCACAGCAAAAGTGGGGAGATCAACCCGGTGAAGGTGAGCAACCTGGTGCGCGCCTACGTCCAACGCTACCGCTACTTCCGCAAGCACGGCCGCAAGCCGGGGGACCCCCCGGGGCCCCCACGGCCGCCCAAGGAGCCGGGACCCCCTGATAAGGGCGGCCCGGGCCTGCCCCTGCCCCCTCTCTGA

Related Sequences

bmy_06372T0 SequenceType object (3)

Length: 849 aa      View alignments
>bmy_06372T0
MEEEDESRGKTEESGEDRGDGPPDRDPSLSPSAFILRAIQQAVGSSLQGDLPNDKDGSRCHGLRWRRCRSPRSEPRSQESGGTDTASVLDVAADGLLAGLVSILDPPDTWVPSHLDLRPGESEDMLELVAEVRIGDRDPVPLPVPSLLPRVRAWRTGKTVSPQRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDSEKGPAPAQPPSGSTSLGGERDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKPDPRGPSPAPASSPKREVLYDSEGLSAEERGGKSSEKDRRRSGAASSSSSSREKGSRRKALDGGDRDRDRDRERDRDRSSKKARPPKELAPSSGPPPKPPVSSGSGSSSSSSSSSSRKVKLQSKVAVLIREGVSSTTPAKEATSAGLGSIGVKFSRDRESRSPFLKPDERAPTEVAKAAQGSTKPKKTKVKAKAGAKKAKGTKGKTKPSKTRKKIRSGGGSSGGSSGPVTLKKSKADSCSQAAGAKGAEETSWSGEERAAKAPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPAPRVSQLPTLPPPMPWSLPAGVDCTTSGVLALTALLFKMEEANLASRAKAQELIQATNQILSHRKPPSSLGVTPAPVPTSLGLPPGPSSYLLPGSLPLGGCGSTPPTPTGLAAASDKREGSSSSEGRGDTDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVSNLVRAYVQRYRYFRKHGRKPGDPPGPPRPPKEPGPPDKGGPGLPLPPL*