Sequence detailsbmy_06442 (Coding sequence)

Part of scaffold_243 (SequenceType object (1))

For more information consult the page for scaffold_243 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LIG1ENSTTRG00000008744 (Bottlenosed dolphin)

Gene Details

ligase I, DNA, ATP-dependent

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008300, Bottlenosed dolphin)

Protein Percentage 93.05%
cDNA percentage 93.24%
Ka/Ks Ratio 0.13771 (Ka = 0.0112, Ks = 0.0812)

LIG1ENSBTAG00000014595 (Cow)

Gene Details

DNA ligase 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000031866, Cow)

Protein Percentage 87.69%
cDNA percentage 88.77%
Ka/Ks Ratio 0.16581 (Ka = 0.0653, Ks = 0.3937)

LIG1 (Minke Whale)

Gene Details

ligase I, DNA, ATP-dependent

External Links

Gene match (Identifier: BACU002166, Minke Whale)

Protein Percentage 98.88%
cDNA percentage 98.65%
Ka/Ks Ratio 0.09121 (Ka = 0.0043, Ks = 0.0475)

Additional orthologs identified in other species via the OPTIC pipeline.

LIG1 (Human)   Lig1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2718 bp    Location:1429226..1458411   Strand:+
Raw sequence 
>bmy_06442
ATGCAGCGAAGTATTATGTCATTTTTCCAGCCCACGAAAGAGGGCAAAGTGAAGAAGCCAGAGAAGGAGATATCCAACAGCACCAGAGAAACAGAGTCCCCTCCAAAGGTGGCGCTGAAGGAGCGGAATAGAGTGGAACCTGAGGGCGACTCTCCAGTGAAGAGGCCAGGGAGGAAGGTGGCCCGGGTCCTGGGCAGCGAAGGGGAGGAGGAGGAGGAGGAAGCCCCCAAGCCCCCCAAAAGCCAGAAGCCTGCTCCAGATTCCCCACAAGTCTCCCCTCCCAGTCCTGGCACACCACCTGAGAGCAGCCCTTCCCACTCCAGCACCTCTCCCACGGCTGTCTCCCCATCAGGGATCCCGAAGCGTCGCACGGCCCGGAAGCAGCTTTCCAAACGGACATTTCAGGATGTCCTGCAAGAGCAGGGCAAGGACGAGGACGGGGGAGCCAAGAAGAAGAAGGAGGAGGAGGAAGAAGAATTAGAGGCACCAACAGAAAGCCTCACAGAGCCTGAAGGGGGCAAGAAGAAGGAAGCAGAAGAAGGGGACCAGCCCAGGTCACCCCCTGAGCCCCTGAAGACCTCCACAAAGCCCCCAACAGAAAGCGTTTCAGAGCCCAAGGTGGCCGTGAAGCAGGGACCACAGGAGGACGGCCAGGCTAAGCCTCCCCCCAAAGCTCCCAAGACGCTCAGCAGTTTCTTCTCTCCCCGGAAGCCAGCAATCAAAAAAGAAGCGAAAGAAGAGGGACCCAGCGCTCTGAGAAAGGATGAGACCAAGGGAGTCCCTTACCTGGCTGTGGCCCGGACGTTTGAGAAGATCGAAGAGGTTTCCGCGCGGTGGTCACACACACCCCCCCGCCCCGTCCCCTCCTCCAGGCTCCGGATGGTGGAGACACTGAGCAACCTCCTGCGCTCCGTGGCGGCGCTGTCACCTGCTGACCTCCTCCCCGTCCTCTACCTCAGCCTCAACCGCCTGGGGCCGCCCCAGCAGGGCCTGGAGCTCGGCATTGGCGACGGCATCCTCCTCAAGGYGGTGGCCCAGGCCACAGGCCGGCAGCTCGAGTCGGTCCGGGCCGAGGCGGCCGAGAAGGGCGACGTGGGGCTGGTGGCCGAGAGCAGCCGCAGCACCCAGAGGCTCGTGCTGCCCCCGCCCGCCCTCACCGCCGCCGGCGTCTTCACCAAGTTCCGGGACATCGCGCAGCTGGCCGGCAGCGCTTCCACAGCCAAGAAGATGGACGTCATCAAAGGCCTCTTTGTGGCCTGCCGCCACTCAGAAGCACGGTTCATCGCCAGAGCCCTGAGTGGACGGCTGCGCCTCGGGCTGGCAGAGCAGTCGGTGCTGGCGGCCCTCGCCCAGGCCGTGAGCCTCACCCCGCCAGGTCAAGAATTCCCCCCAGCCGTGGTGGATGCTGGGAAGGGCAAGACAGCAGAGGCCAGAAAGACGTGGCTGGAGGAGCAAGGCATGATCCTGAAGCAGACGTTCTGCGAGGTGCCCGACCTGGACCGGATCGTCCCCGTGTTGCTGGAGCATGGTCTGGAGCGGCTCCCAGAGCACTGCAGGCTGAGCCCAGGGGTCCCCCTGAAACCGATGTTGGCCCACCCAACCCGGGGCGTCAGCGAGGTCCTGAGGCGCTTTGAGGAGGCAGCTTTCACCTGCGAGTACAAATACGATGGGCAGAGGGCACAGATCCATGTTCTGGAAGGTGGGGAGGTGAAGATCTTCAGCAGGAATCAGGAGGACAACACCGGAAGGTACCCCGATATCATCAGCCGCATCCACAAGATTAAACTCCCGTCAGTCACATCCTTCATCCTGGACGCAGAAGCCGTGGCTTGGGACCGCGAAAAGAAGCAGATCCAGCCATTCCAAGTGCTCACCACCCGCAAACGCAAGGAGGTGGACGCGGCAGAGATCCAGGTGCAGGTGTGTCTGTACGCCTTCGACCTCATCTACCTCAATGGAGAGTCCCTGGTACGTGAGCCCCTTTCCCGACGCCGGCAGCTGCTCCGGGAGAACTTCGTGGAGACGGAGGGCGAGTTTGTCTTTGCCACCTCTCTGGACACCAAGGACACGGACCAGATCGCCGAGTTCTTGGAGCAGTCGGTGAAAGACTCCTGCGAGGGGCTGATGGTGAAGACCCTGGATGTGGACGCCACCTACGAGATTGCCAAGAGGTCGCACAACTGGCTCAAGCTGAAGAAGGACTACCTCGATGGTGTGGGCGACACCCTGGACCTCGTGGTGATCGGCGCCTACCTGGGCCGGGGGAAGCGGGCCGGCCGGTATGGGGGCTTCCTGCTGGCCGCCTACGACGAGGAGAGCGAGGAGCTGCAGGCCATATGCAAGCTCGGAACGGGCTTCAGTGACGAGGAGCTGGAGGAGCATCACCAGAGCCTGCAGGCCCTGGTGCTGCCCGCCCCACGCTCCTATGTCCGGGCCGAGGGCGCCGTGGCCCCCGACCACTGGCTGGACCCCAGCGCCGTGTGGGAGGTGAAGTGCGCAGACCTCTCCCTCTCCCCCATCTACCCGGCTGCCCGGGGCCTGGTGGATAGCGAGAAGGGAATCTCCCTCCGCTTCCCTCGGTTTGTCTGCGTCCGTGAGGACAAGAAGCCGGAGGAGGCCACCACCAGTGCCCAGGTGGCCTGTCTGTACCGGAAGCAAAGTCAGATTCAGAACCAGCACGGCGCAGAGCCAGACTCCGACCTGGAAGATTTCTACTAG

Related Sequences

bmy_06442T0 SequenceType object (3)

Length: 906 aa      View alignments
>bmy_06442T0
MQRSIMSFFQPTKEGKVKKPEKEISNSTRETESPPKVALKERNRVEPEGDSPVKRPGRKVARVLGSEGEEEEEEAPKPPKSQKPAPDSPQVSPPSPGTPPESSPSHSSTSPTAVSPSGIPKRRTARKQLSKRTFQDVLQEQGKDEDGGAKKKKEEEEEELEAPTESLTEPEGGKKKEAEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRKPAIKKEAKEEGPSALRKDETKGVPYLAVARTFEKIEEVSARWSHTPPRPVPSSRLRMVETLSNLLRSVAALSPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKXVAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFTKFRDIAQLAGSASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRSYVRAEGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVCVREDKKPEEATTSAQVACLYRKQSQIQNQHGAEPDSDLEDFY*