Part of scaffold_251 (Scaffold)

For more information consult the page for scaffold_251 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL8A1 ENSTTRG00000001561 (Bottlenosed dolphin)

Gene Details

collagen, type VIII, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001471, Bottlenosed dolphin)

Protein Percentage 97.56%
cDNA percentage 97.92%
Ka/Ks Ratio 0.36258 (Ka = 0.0131, Ks = 0.036)

COL8A1 ENSBTAG00000013662 (Cow)

Gene Details

collagen alpha-1(VIII) chain precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018159, Cow)

Protein Percentage 95.43%
cDNA percentage 93.28%
Ka/Ks Ratio 0.15776 (Ka = 0.0257, Ks = 0.163)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2238 bp    Location:201528..206610   Strand:+
>bmy_06523
ATGGCTGGTCCACCTGCCCTTCTGCAGCTGCTGGGAGTACTGCTTACCATTTCCCTGGGTTCCGTCCGGCTCATCCAAGCTGGTGCCTACTATGGCATCAAGCCGCTGCCACCTCAAATTCCTCCTCAGATTCCACCGCAAATTCCACAATACCAGCCCCTGGGCCAACAAGTACCTCACATGCCTTTGGGTAAAGATGGCCTTAACGTGGGCAAGGAGCTGCCCCACATGCGGTATGGCAAAGAGTATCCACATCTACCCCAATATATGAAGGAAATTCAGCCGGCACCAAGAATGGGCAAGGAAGCAGCACCCAAGAAAGGCAAAGCAGAAATACCATTAGCCAGTTTACGGGGGGAGCAAGGTCCCCGTGGAGAGCCTGGCCCAAGAGGACCACCTGGGCCCCCTGGTTTACCAGGTCAAGGGATACCTGGAATCAAAGGAAAACCAGGGCCACAGGGATATCCAGGAATTGGAAAGCCAGGTATGCCTGGAATGCCAGGAAAGCCAGGAGCCATGGGAATGCCTGGGGCCAAAGGTGAAATTGGACCCAAAGGGGAGATCGGACGCATGGGGATCCCAGGACCTCAAGGACCTCCAGGGCCTCACGGACTTCCTGGCATTGGGAAGCCAGGTGGGCCAGGGTTACCAGGGCAACCAGGTGCCAAAGGTGAGCGAGGACCCAGAGGACCACCAGGACCTCCAGGCCTTCAGGGTCCTAAAGGAGAGAAGGGCTTCGGGATGCCAGGTCTGCCAGGCCTGAAGGGTCCTCCAGGGATGCATGGCCCTCCCGGCCCTGTCGGACTTCCAGGAGTGGGCAAACCAGGAGTGACAGGCTTCCCTGGGCCCCAGGGCCCCCTGGGAAAGCCAGGCCCTCCAGGCGAACCTGGGCCACAAGGCCCTATAGGGGTCCCAGGGTTTCAAGGACCTCCTGGGATGCCTGGAATTGGAAAACCAGGCCAGGATGGGATCCCTGGGCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGACTGCCAGGACCCCCAGGCCCTCCAGGGATCGGGAAACCTGGCTTCCCAGGCCCCAAAGGCGACAGGGGCATAGGGGGTCTTCCTGGGGCTCTGGGACCAAGAGGGGAGAAAGGACCAACAGGTGCCCCTGGACTGGGGGGCCCCCCAGGAGAGCCAGGCCTGCCTGGAATCCCAGGTCCCATGGGCCCTCCAGGGGCTATCGGTTTCCCTGGACCCAAAGGAGAAGGTGGGGCTGTGGGGCCACAGGGGCCACTAGGTCCCAAGGGTGAGCCAGGGCTTCAAGGCTTCCCAGGAAAGCCAGGTTTCCTTGGTGAAGCGGGGCCCCCCGGCATGAGGGGTTTGCCAGGTCCCATAGGGCCCAAGGGGGAAGCTGGGCATAAAGGTTTGCCAGGGCTCCCTGGTGCCCCAGGGCTGCTTGGACCAAAGGGACAGCCAGGAATCCCAGGAGACCAGGGCTTACAGGGGCCCCCAGGTATCCCAGGGATTGCAGGCCCGAGTGGCCCCATTGGACCGCCTGGAATTCCTGGCCCCAAAGGGGAACCGGGTCTCCCAGGGCCCCCTGGGTTCCCTGGAGTAGGGAAGCCCGGAGTAGCAGGACTTCATGGCGCCCCAGGGAAGCCTGGTGCCCTTGGTCCCCAAGGCCAGCCTGGCCTTCCAGGGCCCCCAGGCCCTCCAGGGCCCCCGGGACTCCCAGCTGTGATGCCCCCGACACCACCACCCCATGGAGAGTATCTACCAGATATGGGGCTGGGAATTGACGGAGTGAAAACCCCCCACGCCTATGGGGCTAAGAAAGGCAAGAACGGAGGGCCAGCCTACGAGATGCCTGCATTTACCGCTGAGCTGACTGCACCTTTCCCACCCGTGGGGGCCCCAGTGAAGTTTGACAAACTGCTCTATAATGGCAGACAGAACTACAACCCGCAGACGGGCATCTTCACCTGCGAGGTCCCTGGGGTCTACTACTTTGCATACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGCTCTGTTCAAGAACAACGAGCCCATGATGTACACGTATGACGAGTACAAGAAGGGCTTCCTGGACCAGGCGTCCGGGAGCGCGGTGCTGCTGCTCCGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCTGAACAGGCTGCGGGACTGTATGCCGGGCAGTACGTCCATTCCTCTTTTTCAGGGTATTTATTGTATCCCATGTAA

Related Sequences

bmy_06523T0 Protein

Length: 746 aa      View alignments
>bmy_06523T0
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