Part of scaffold_252 (Scaffold)

For more information consult the page for scaffold_252 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSMD12 ENSTTRG00000013945 (Bottlenosed dolphin)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 12

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013223, Bottlenosed dolphin)

Protein Percentage 96.92%
cDNA percentage 96.78%
Ka/Ks Ratio 0.20769 (Ka = 0.0056, Ks = 0.027)

PSMD12 ENSBTAG00000002423 (Cow)

Gene Details

26S proteasome non-ATPase regulatory subunit 12

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003145, Cow)

Protein Percentage 99.12%
cDNA percentage 96.49%
Ka/Ks Ratio 0.02854 (Ka = 0.004, Ks = 0.139)

PSMD12  (Minke Whale)

Gene Details

proteasome (prosome, macropain) 26S subunit, non-ATPase, 12

External Links

Gene match (Identifier: BACU011662, Minke Whale)

Protein Percentage 99.76%
cDNA percentage 99.29%
Ka/Ks Ratio 0.09528 (Ka = 0.0013, Ks = 0.0134)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1371 bp    Location:1231629..1255816   Strand:+
>bmy_06562
ATGGCGGAAGACGGCTCGGAGCGGGCAGATGGGCGCATCGTCAAGATGGAGGTGGACTACAGCGCCACGGTGGATCAGCGGCTGCCGGAGTGCGAGAAGCTGGCCAAGGAAGGAAGACTTCAAGAAGTCATTGAAACCCTTCTCTCTTTGGAAAAACAGACCCGAACTGCTTCTGATATGGTGTCTACATCCCGTATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGGGATTTACTTAATGAAAATATTATCCTTTTGTCAAAAAGACGGAGTCAGTTAAAACAAGCTGTTGCAAAAATGGTTCAGCAGTGCTGTACTTACGTTGAGGAAATCACAGACCTTCCAATCAAACTTCGATTAATTGATACTCTACGAATGGTTACAGAAGGAAAGATTTACGTTGAAATTGAGCGTGCTCGGCTGACTAAAACATTAGCAACTATAAAAGAGCAAAACGGTGACGTCAAAGAGGCAGCCTCCATTTTACAAGAGTTACAGGTGGAAACGTATGGGTCAATGGAAAAGAAAGAGCGAGTGGAGTTTATTTTGGAGCAAATGCGGCTCTGCCTAGCTGTGAAGGATTACATTCGTACACAAATCATCAGCAAGAAAATTAACACCAAATTTTTCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAATACTATAACTTAATGATTCAGCTGGATCAACATGAAGGATCTTATTTGTCTATTTGTAAACACTACAGAGCAATCTATGATACTCCCTGTATACAGGCAGAAAGTGAAAAGTGGCAACAGGCCCTGAAAAGTGTTGTCCTTTATGTTATCTTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACAAGAAGTTAGAAGAAATTCCTAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACRCTTGTTGAAGACTATGGAATGGAATTAAGAAAAGGTTCTCTGGAGAGTCCTGCAACTGATGTTTTTGGTTATACAGAGGAAGGTGAAAAAAGGTGGAAAGACTTGAAAAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTACACGAGGATAACAATGAAGAGGATGGCACAACTTCTGGATCTATCTGTTGATGAGTCAGAGGCTTTYCTCTCGAATCTAGTAGTTAACAAGACCATCTTTGCTAAAGTAGACAGGTTGGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGACTGGTCTCAGAAACTGAACTCATTGATGTCTCTAGTTAACAAAACCACACACCTCATAGCCAAAGAGGAGATGATACATAATCTACAATAA

Related Sequences

bmy_06562T0 Protein

Length: 457 aa      View alignments
>bmy_06562T0
MAEDGSERADGRIVKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIILLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ*