Part of scaffold_245 (Scaffold)

For more information consult the page for scaffold_245 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HIF3A ENSTTRG00000001609 (Bottlenosed dolphin)

Gene Details

hypoxia inducible factor 3, alpha subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001516, Bottlenosed dolphin)

Protein Percentage 97.14%
cDNA percentage 97.56%
Ka/Ks Ratio 0.35466 (Ka = 0.0179, Ks = 0.0504)

HIF3A ENSBTAG00000018948 (Cow)

Gene Details

hypoxia-inducible factor 3-alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025217, Cow)

Protein Percentage 94.31%
cDNA percentage 93.77%
Ka/Ks Ratio 0.15877 (Ka = 0.0306, Ks = 0.1928)

HIF3A  (Minke Whale)

Gene Details

hypoxia inducible factor 3, alpha subunit

External Links

Gene match (Identifier: BACU002132, Minke Whale)

Protein Percentage 90.14%
cDNA percentage 92.35%
Ka/Ks Ratio 0.58706 (Ka = 0.0715, Ks = 0.1217)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1824 bp    Location:406713..430542   Strand:+
>bmy_06581
ATGTGGCAGCAACCCACGTACTTGTCCCATCCAACTCTTTCCCTTCCCGGGGCGCCGCCAGTGAACGCTGCCCATGCCCGCAGGTCGAGCACGGAGCTGCGCAAGGAGAAGTCCCGGGATGCGGCCCGCAGCCGGCGCAGCCAGGAGACCGAGGTGCTGTACCAGCTGGCGCACACGCTGCCCTTCGCGCGCGGGGTGAGCGCCCACCTGGACAAGGCCTCCATCATGCGCCTCACCATCAGCTACCTGCGCATGCACCTCTGCGCCGCAGTGAAGGAAAGCAGAGGGAGGCTAGCCAGGGTGGGCTTACCGCTGACTAGAGATGCCCCATCCATCCTGGTCCGGACACCAGGGGAGTGGAACCAGGTGGGAGCAGGGGGCGAACCACTGGATGCCTGCTACCTGAAGGCCCTGGAGGGCTTCGTTATGCTTGAGCTGATCGGACACAGTATTTTTGATTTTATCCATCCCTGTGACCAAGAGGAGCTTCAGGACGCCCTGACCCCCCGGCAGAGCCTGTCCAAAAAGAAGCCGGAGGCCCCCACCGAGCGGTGCTTCTCCTTGCGCATGAAGAGCACCCTCACCAGCCGCGGGCGCACCCTCAACCTCAAGGCGGCCACCTGGAAGGTACTGCACTGTTCTGGACACATGAGGGCCTACAAGCCCCCTGCACAGTCTTCCCCGGCCGGGAGCCCCAACTTGGAGCCCCCCCTGCAATGCCTGGTGCTAATCTGTGAAGCCATCCCCCACCCTGGCAGCTTGGAGCCCCCGTTGGGCCGGGGGGCCTTCCTCAGCCGCCACAGCCTGGACATGAAGTTCACCTACTGTGACGAGAGGATTGCGGAGGTTGCTGGCTACAGCCCTGATGACCTGATTGGCTGTTCTGCCTATGAGTACATCCATGCGCTGGACTCAGATGCAGTCGGCCAGAGCATCCATACCTTGCTGAGCAAGGGCCAGGCAGTAACGGGGCAGTACCGCTTCCTGGCCCGGAGTGGTGGCTACCTGTGGACCCAGACCCAGGCCACAGTGGTGTCGGGGGGCCGGGGCCCCCAGTCTGAGAGTATCGTCTGCGTCCATTTCCTGATCAGCCGGGTGGAAGAGACCGAAGTGGTGCTGTCCCTGGAGCAAACGGAGCGACACTCTCGCAGACACGTTCAGCGGGGCACCCCCTCTCAGAAGGATGCCCCTAATCCTGGTGACAGCCTTGACACCTCTGGTCCCCGGATCCTAGCCTTCCTGCACCCCCCTGCCCTGAGTGAGGCCGCCCTGGCCGCTGACCCCCGTCGTTTCTGTAGCCCTGACCTCCGTCGCCTCCTGGCACCGATCCTGGATGGGACTTCAGTAGCCGCTACCCCCAGCGCACCCCCAGCCCCACGACGCCCCCGAAGTCCTCTTCCGGCTGATCTCCCAGATGAACTACTTGTGGATGTGGAGAATGCACACAAACTCTTTGCCTCTGGGAAAGACCTTGAGGCAGTGGAGACAGATCTAGATATAGCTCAGCTCAACTCCAGTGAGCAGCTACCCAGGGCCTACCACAGACCTCCAGGGGCTGTTCCCCGGCCCCGTGCACGGAGCTTCCACGGCATGGCCCTGGCCCAGAGCTCAGAGGACGAGGCAGAGGGGGTGGAGCTGCTGGGAAGTTTCCTTCTGACAGGAGGACCAGCCCCAGGGAGCCAGCAGGATCCCAGCACCCACCTCCTAGAACTGAATGAGCCCCTGGGCCTGGGCCCCTCCCTGCTCTCTCTCTACCCGGACGAGGACACCACCCAGCCCAGGAGCCACTTTCAGCCAGCGGCAGGCTTGGCCCAGGCCAACTGA

Related Sequences

bmy_06581T0 Protein

Length: 608 aa      View alignments
>bmy_06581T0
MWQQPTYLSHPTLSLPGAPPVNAAHARRSSTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHLCAAVKESRGRLARVGLPLTRDAPSILVRTPGEWNQVGAGGEPLDACYLKALEGFVMLELIGHSIFDFIHPCDQEELQDALTPRQSLSKKKPEAPTERCFSLRMKSTLTSRGRTLNLKAATWKVLHCSGHMRAYKPPAQSSPAGSPNLEPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEYIHALDSDAVGQSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSESIVCVHFLISRVEETEVVLSLEQTERHSRRHVQRGTPSQKDAPNPGDSLDTSGPRILAFLHPPALSEAALAADPRRFCSPDLRRLLAPILDGTSVAATPSAPPAPRRPRSPLPADLPDELLVDVENAHKLFASGKDLEAVETDLDIAQLNSSEQLPRAYHRPPGAVPRPRARSFHGMALAQSSEDEAEGVELLGSFLLTGGPAPGSQQDPSTHLLELNEPLGLGPSLLSLYPDEDTTQPRSHFQPAAGLAQAN*