Part of scaffold_260 (Scaffold)

For more information consult the page for scaffold_260 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HMHA1 ENSTTRG00000001483 (Bottlenosed dolphin)

Gene Details

histocompatibility (minor) HA-1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001399, Bottlenosed dolphin)

Protein Percentage 75.91%
cDNA percentage 76.17%
Ka/Ks Ratio 0.15136 (Ka = 0.0282, Ks = 0.1863)

HMHA1 ENSBTAG00000020772 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027682, Cow)

Protein Percentage 67.76%
cDNA percentage 72.51%
Ka/Ks Ratio 0.21092 (Ka = 0.2459, Ks = 1.1657)

HMHA1  (Minke Whale)

Gene Details

histocompatibility (minor) HA-1

External Links

Gene match (Identifier: BACU006528, Minke Whale)

Protein Percentage 93.8%
cDNA percentage 94.89%
Ka/Ks Ratio 0.23398 (Ka = 0.0361, Ks = 0.1541)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3975 bp    Location:582099..595392   Strand:+
>bmy_06657
ATGTTCTCCAGGAAGAAGCGGGAGCTCATGAAAACCCCTTCTATCTCGAAAAAGAACCGGGCGGGAAGCCCCTGTCCGCAGCCCTCGGGGGAGCTCCCCAGGAGAGATGGGGCTGATGCAGTGTCCCTGGCGCCCAGCCTGGAACCACCAAGTGTGGCCTTGAATGCCAAGGCCACGGGAACACTCAAGAGGCCCACCAGCCTAAGCCGCCACGCCAGTGCTGCCGGCTTCCCACTGTCCGGAGCCAGCACCTGGACGCTGGGCCGTGGCCACCGCAGCCCACTGTCAACAGCCAGCCCAGCTGAGGGACCCATCCAGGGACCCTGCCCCGACACTGTGGAGGACATCTCCCACCTGCTGGCTGACGTGGCCCGCTTCGCCGAGGGCCTTGAGAAGCTGAAGGAGTGTGTTTTGCGTGAAGCCTTCCATTATGAGTGCAACAATGATTCAGACAAGCAGGAGTTTGAGAAGGCCTTGGAGACCATCGCAGTCTCCTTCAGCAGCACTGTGTCCGAGTTCCTCATGGGTGAAGTGGACAGCAGCATCCTCCTCTCAGTGCCCCCTGGGGACCCGGGCCAGTCCATGGAGAACCTGTATGGACAGGGGAGTGAGGGTGCCCCGCCCAGCAGTGAGGACTGTGATGAGGGCTGCCTCTCCCCGGAGGCGGTGGACACGCTGCTGCAGCGCTGTGAGGGGGGTGTGGACGCCGCGCTGCAGTACGCCAAGAACATGGCCAAGTACATGAAGGACCTCATCGGCTACCTGGAGAAGCGGAGCGCGCTGGGTGCGAGCTGGGGCCCGCGGGGCGGCGTCTGGTTGGAAGGCCCCTCCCCTCACCCCTGCGCTCACACCCCTCCCCTCACCCCTGCGCTCACACCCCTCCCCTCACCCCTGCGCTCACACCCCTCCCCGCCTGCAGAGACGGACTTTGCCAAAGGCCTGCAGAAGATCGTCCAGAACTGCAGACAGAGCGTCATGCAGGAGCCGCACATGCCCCTCTTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCTGGAGTTCGGCCACGGCCTGGTGCAGGCGGTGGGCACGCTGCAGACCCAGACCTTCGTGCAGCCCCTGAACCTGCGGCGGCTCGAGCACGAGAAGCGCAGGAAGGAGATCAAGGAGTCTTGGCACCGTGCCCAGAGGAAGCTGCAAGAGGCAGAGTCCAATCTGCGCAAGGCCAAGCAGGGCTACGTTCAGCGCTGCGAAGACCACGACAAGGCCCGCTTCCTAGTGGCCAAGGCGGAGGAAGAGCAGGCGGGCGCTGGCCCAGGTGCAGGGGGCGCGGCCTCCAAGACCCTGGACAAGAGGCGGCGCCTGGAGGAGGAGGCCAAAAACAAGGCGGAGGAAGCCATGGCCACGTACCGCACGTGCGCGGCGGATGCTAAGACGCAGAAGCAGGAGCTTGAGGACACCAAGGTGACGGCACTCCGGCAGATCCAGGAGGTCATCCGGCAGAGCGACCAGACCATCAAGTCGGTGAGCGCTGTGCTCCCACCCCCGCCCCCGCCCCCGCCCCCACCGGGGTGGGCGGGGCGGCTGCCCGTCCAGCCTCAGGACCTCCAGCACTTAGGGCCCCTCCCACCTGCCTGCCCGCAGGCCACCATCTCCTATTACCAGATGATGCACATGCAGACGGCCCCGCTGCCTGTGCACTTCCACATGCTGTGCGAGAGCAGCAAGCTGTACGACCCGGGCCAGCAGTACGCCTCCCACGTGCGCCAGCTGCAGCGCGGCGAGGAGCCAGACGTGCACTACGACTTCGAGCCCCACGTCTCCGCCAACGCCTGGTACCCCGCCGTCTGCGCATGCCCGGGGGAGCTGGACTTCCCTCCTGAGGTGGGGGCGGGGGCAGTGAGCCTCTGTGACCCCCATCGTGGCCCCTTCTTTTGGCTGTTGGTCCCACCAGGTCCCCGGTCTTGCGCGCCCGAAAGGGCAGCTTCAACGTCAGCGATGCCGCGGTGGCGGAGGCCGCGGGCTGCCCCCCACAGGAAGGTGGGCTCGGCGACGGGGAGCTTGCCAAGGAGCGCAGGGGTGAGTGTACGGCAGGGGCGGGCGCGGCCCCCCTGCAGCCCCCTTCAGCCCTTCACTGGGGACACCTTCGCAGGTGGGCGCGGACACCAGGTGCACAAGTCGTGGCCGATCGCCATCTCAGACTCTGACGCCAGTCTGGACCCCAGCCCTGGCTCAGGTGAAGGGGCCTGGCCGGCGGCGGGGGGCTCACAGAGCTGCCGCCCCCGCCCCCGGGTTTCAGCGGGCTCATCGTGCAGCCGGGGGCCCTCGGGGGAGTCTCTCACAACCCCTGTTTCCTGCTCAGGGGACTTTAAGAAGTTCGAGCGCATGTCTTCCAGTGGCACCGTGTCGTCCAGCGAGGAGCTGGCCGACCAGGAGGGCAGCACAGGCGCATCAGCCTTTGACCAGGGTGAGGGGACCCCTGGGCGGGGCAGTGGGGAGAGGGGGGTTTGGACTCTCTCTGTGCATCTGGCCCTGACCTGCCTTGGTGACACTGACCACCTGCCCCCGCCCCCACCAGATGACCTCAATGGCATGGCCCCGGAGCTGCCTGTGGCCATGCCCAGAGGGCCCTTCCGCCACGTGGGGCTGTCCAAGGCGGCCCGTACCCACCGGCTCCGGAAGCTCCGCACGCCGGCCAAGTGCCGGGAGTGCAACAGCTACGTGTACTTCCAGGGCGCCGAGTGTGAGGAGTGCTGCCTGGCCTGCCACAAGAAGTGCCTGGAGACCCTGGCCATCCAGTGTGGCCACAAGAAGCTGCAGGGCCGCCTGCAGCTCTTTGGCCAGGACTTCAGCCAGGCCGCCCGCAGCACCCCGGACGGCGTGCCCTTCATCGTCAAGAAGTGTGTCTTCGAGATCGAGCAGCGGGCGCTGCGCACCAAGGGCATCTACCGGGTCAATGGGGTGAAAACGCGTGTGGAGAAGCTGTGCCAGGCCTTCGAGAACGGCAAGGAGCTGGTGGAGCTGTCGCAGGCCTCGCCCCACGACATCAGCAACGTCCTCAAGCTCTACCTGCGCCAGCTGCCTGAGCCGCTCATCTCCTTCCGCCTCTACCATGAGCTTGTGGGGCTGGCCAAGGACAGTCTGAAGGCAGAGGCCGAGGCCAAGGCGGCAACCCGAGGCCGGCCAGATGTCACCGAGAGAGAGGCTGTGGCCGTGGCCATGGCGGGCCGGCTGCGGGAGCTCCTGCGGGACCTGCCGCCGGAGAACTGGGCCACGCTGCAGTACCTGATGCGGCACCTGCGCAGGATCGTGGAGGTGGAGCAGGATAACAAGATGACGCCAGGGAACCTGGGCATCGTGTTTGGGCCCACGCTGCTGCGGCCCCGGCCCACGGAGGCCACCGTGTCCCTCTCCTCCCTGGTGGACTACCCCCACCAGGCCTGCATCTTGGAGACCCTCATCAGCCACTACAGCCTGGTCTTTGAGGAGGAGCCCGAGGCGGCATCCGGGTGCCAGGATGTGACGTCCAACCAGGGGGCCGAGGTGGTGGTCCAGGAGCCGTACCCGGAGGTCAGCGGGGGCGTGGCCTTCCCCCTGCCGGAGGAGGCTGAGGATGGGGGCCTCGAACCCCACGCTGCCTCCAACGACTCCGACTCAGAACTGGAGGAGGCCTCGGACCTGCCGTCCCCGGCGGGTGGGGCGGCCCTGCACCGCCTCGGCTTCCTGGAGAAGCTGGGTGGCGAGGCGGGCGCGGAGGGCGGCCGGGACAGCCGCAGCGGCAGTGAGGAGCAGCTGGGCACTGCCACCGGGGAGGGGGAGGATGGGCCCGGGCCTGGGGTCTGGGAGGACCTCGGGGAGGAGCCGGCCCAGCGGCTCGCCGAGCACAATACCAACCAGTGCAACAACGTGGCTGCGGCCCGCCTGCCAGCCGTGAGGCTCCGCGGCGGGCGGCTGGCAGGGGGCGCAGGCTGGGAGAGGCGGCCAGAGTTCGTGTAG

Related Sequences

bmy_06657T0 Protein

Length: 1325 aa      View alignments
>bmy_06657T0
MFSRKKRELMKTPSISKKNRAGSPCPQPSGELPRRDGADAVSLAPSLEPPSVALNAKATGTLKRPTSLSRHASAAGFPLSGASTWTLGRGHRSPLSTASPAEGPIQGPCPDTVEDISHLLADVARFAEGLEKLKECVLREAFHYECNNDSDKQEFEKALETIAVSFSSTVSEFLMGEVDSSILLSVPPGDPGQSMENLYGQGSEGAPPSSEDCDEGCLSPEAVDTLLQRCEGGVDAALQYAKNMAKYMKDLIGYLEKRSALGASWGPRGGVWLEGPSPHPCAHTPPLTPALTPLPSPLRSHPSPPAETDFAKGLQKIVQNCRQSVMQEPHMPLLSIYSLALEQDLEFGHGLVQAVGTLQTQTFVQPLNLRRLEHEKRRKEIKESWHRAQRKLQEAESNLRKAKQGYVQRCEDHDKARFLVAKAEEEQAGAGPGAGGAASKTLDKRRRLEEEAKNKAEEAMATYRTCAADAKTQKQELEDTKVTALRQIQEVIRQSDQTIKSVSAVLPPPPPPPPPPGWAGRLPVQPQDLQHLGPLPPACPQATISYYQMMHMQTAPLPVHFHMLCESSKLYDPGQQYASHVRQLQRGEEPDVHYDFEPHVSANAWYPAVCACPGELDFPPEVGAGAVSLCDPHRGPFFWLLVPPGPRSCAPERAASTSAMPRWRRPRAAPHRKVGSATGSLPRSAGVSVRQGRARPPCSPLQPFTGDTFAGGRGHQVHKSWPIAISDSDASLDPSPGSGEGAWPAAGGSQSCRPRPRVSAGSSCSRGPSGESLTTPVSCSGDFKKFERMSSSGTVSSSEELADQEGSTGASAFDQGEGTPGRGSGERGVWTLSVHLALTCLGDTDHLPPPPPDDLNGMAPELPVAMPRGPFRHVGLSKAARTHRLRKLRTPAKCRECNSYVYFQGAECEECCLACHKKCLETLAIQCGHKKLQGRLQLFGQDFSQAARSTPDGVPFIVKKCVFEIEQRALRTKGIYRVNGVKTRVEKLCQAFENGKELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVGLAKDSLKAEAEAKAATRGRPDVTEREAVAVAMAGRLRELLRDLPPENWATLQYLMRHLRRIVEVEQDNKMTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQACILETLISHYSLVFEEEPEAASGCQDVTSNQGAEVVVQEPYPEVSGGVAFPLPEEAEDGGLEPHAASNDSDSELEEASDLPSPAGGAALHRLGFLEKLGGEAGAEGGRDSRSGSEEQLGTATGEGEDGPGPGVWEDLGEEPAQRLAEHNTNQCNNVAAARLPAVRLRGGRLAGGAGWERRPEFV*