Part of scaffold_260 (Scaffold)

For more information consult the page for scaffold_260 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2E ENSTTRG00000001484 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001400, Bottlenosed dolphin)

Protein Percentage 82.5%
cDNA percentage 84.38%
Ka/Ks Ratio 0.18636 (Ka = 0.1236, Ks = 0.6633)

POLR2E ENSBTAG00000020776 (Cow)

Gene Details

DNA-directed RNA polymerases I, II, and III subunit RPABC1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027684, Cow)

Protein Percentage 82.5%
cDNA percentage 81.04%
Ka/Ks Ratio 0.07823 (Ka = 0.12, Ks = 1.5342)

POLR2E  (Minke Whale)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide E, 25kDa

External Links

Gene match (Identifier: BACU006527, Minke Whale)

Protein Percentage 85.0%
cDNA percentage 85.83%
Ka/Ks Ratio 0.16599 (Ka = 0.1036, Ks = 0.624)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 483 bp    Location:613254..595424   Strand:-
>bmy_06658
ATGGCCCCGACCTTCTCCCTGCTCCCTCCACCAAGTGGGCAGCTGTGCCACGATCGTGGCTACCTAGTGACCCAGGATGAGCTGGACCAGACGCTGGAGGAGTTCAAGGCCCAGTTTGGGGACAAGCCCAGTGAAGGGCGGCCTCGGCGCACAGACCTCACGGTGCTGGTGGCCCACAACGATGACCCCACTGACCAGATGTTCGTCTTCTTCCCAGAGGAGCCCAAGGTGGGCATCAAGACCATCAAGGTGTACTGCCAGCGGATGCAGGAGGAGAACATCACGCGGGCCCTCATCGTGGTACAGCAGGGCATGACGCCCTCCGCCAAGCAGTCCCTGGTCGACATGGCCCCCAAGTACATCCTGGAGCAGTTTCTGCAGCAGGAGCTGCTCATCAACATCACGGAGCACGAGCTCCCTGGCCCCCAAGCCCAGCGAGGAGCTGGGGACGGCGCTCAGTGCCCTGTGTGTCTGGGTCGCTAG

Related Sequences

bmy_06658T0 Protein

Length: 161 aa      View alignments
>bmy_06658T0
MAPTFSLLPPPSGQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELPGPQAQRGAGDGAQCPVCLGR*