Sequence details bmy_06665 (Coding sequence)

Part of scaffold_260 (Scaffold)

For more information consult the page for scaffold_260 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CIRBP ENSTTRG00000011049 (Bottlenosed dolphin)

Gene Details

cold inducible RNA binding protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010466, Bottlenosed dolphin)

Protein Percentage 93.51%
cDNA percentage 93.72%
Ka/Ks Ratio 0.49301 (Ka = 0.0535, Ks = 0.1085)

CIRBP ENSBTAG00000007480 (Cow)

Gene Details

cold-inducible RNA-binding protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004477, Cow)

Protein Percentage 94.81%
cDNA percentage 90.48%
Ka/Ks Ratio 0.13576 (Ka = 0.044, Ks = 0.3241)

Additional orthologs identified in other species via the OPTIC pipeline.

CIRBP (Human)   Cirbp (Mouse)  

Genome Location

Sequence Coding sequence

Length: 519 bp    Location:726394..737002   Strand:+
Raw sequence 
>bmy_06665
ATGGGTAATTGGGGCAAGCTGTACGGTTTTGAAATGCCAAAGGACGCGGCCGCCATGGCATCAGATGAGGGCAAGCTTTTCGTCGGAGGGCTGAGTTTTGACACCAATGAGCAGTCACTGGAGCAGGTCTTCTCAAAATATGGACAGATCTCAGAAGTGGTGGTCGTGAAGGACAGGGAGACCCAGCGATCGAGGGGCTTTGGGTTTGTCACCTTTGAGAACATCGATGATGCCAAGGACGCCATGATGGCCATGAACGGGAAGTCTGTGGATGGGCGGCAGATCCGGGTCGACCAGGCTGGCAAGTCGTCTGATAACCGATCCCGCGGGTACCGAGGTGGCTCTGCCGGGGGCCGGGGCTTTTTCCGCGGGGGCCGAGGCCGGGGCCGTGGGTTCTCCAGAGGAGGAGGGGACCGCGGCTACGGGGGGAGCCGGTTCGAGTCCAGGAGTGGGGGCTATGGAGGCTCCAGAGACTACTACAGCAGGTTGAATGGAAGCCAGTGCGACCCGGAAGGGTGA

Related Sequences

bmy_06665T0 Protein

Length: 173 aa      View alignments
>bmy_06665T0
MGNWGKLYGFEMPKDAAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSRLNGSQCDPEG*