Part of scaffold_260 (Scaffold)

For more information consult the page for scaffold_260 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM7 ENSTTRG00000005727 (Bottlenosed dolphin)

Gene Details

LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005409, Bottlenosed dolphin)

Protein Percentage 81.25%
cDNA percentage 82.29%
Ka/Ks Ratio 0.24173 (Ka = 0.1392, Ks = 0.5759)

LSM7 ENSBTAG00000004521 (Cow)

Gene Details

U6 snRNA-associated Sm-like protein LSm7

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005939, Cow)

Protein Percentage 85.06%
cDNA percentage 83.52%
Ka/Ks Ratio 0.07458 (Ka = 0.0926, Ks = 1.2418)

LSM7  (Minke Whale)

Gene Details

LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match (Identifier: BACU006498, Minke Whale)

Protein Percentage 84.27%
cDNA percentage 86.52%
Ka/Ks Ratio 0.28104 (Ka = 0.1103, Ks = 0.3926)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 270 bp    Location:1347364..1350399   Strand:+
>bmy_06689
ATGTGGATGACTGGGCAGCGTCAGAGGGCTAAAAACACAGCGCCTGCCCGTCTAGCCAGCGGAATCCTGAAAGGGTTTGACCCGCTGCTCAACCTCGTGCTGGATGGTACCATCGAGTACATGAGAGACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAGCTGGGCCTGGTGGTGTGCAGGGGCACCTCCGTGGTGCTCATCTGCCCGCAGGACGGCATGGAGGCCATCCCCAACCCCTTCATCCAGCAGCAAGATGCCTAG

Related Sequences

bmy_06689T0 Protein

Length: 90 aa      View alignments
>bmy_06689T0
MWMTGQRQRAKNTAPARLASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA*