Part of scaffold_254 (Scaffold)

For more information consult the page for scaffold_254 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SGCA ENSTTRG00000005444 (Bottlenosed dolphin)

Gene Details

sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005129, Bottlenosed dolphin)

Protein Percentage 96.38%
cDNA percentage 96.47%
Ka/Ks Ratio 0.19031 (Ka = 0.0169, Ks = 0.089)

SGCA ENSBTAG00000003956 (Cow)

Gene Details

alpha-sarcoglycan precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005180, Cow)

Protein Percentage 90.46%
cDNA percentage 92.18%
Ka/Ks Ratio 0.2396 (Ka = 0.0466, Ks = 0.1945)

SGCA  (Minke Whale)

Gene Details

sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)

External Links

Gene match (Identifier: BACU006425, Minke Whale)

Protein Percentage 98.45%
cDNA percentage 98.63%
Ka/Ks Ratio 0.19561 (Ka = 0.006, Ks = 0.0305)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1344 bp    Location:721744..712567   Strand:-
>bmy_06724
ATGGCAGCAGTGCTAATCTGGATTTCTCTCCTTGTGGGTCTCCTGGCAGGGCTGGAGGGCACCGAGGCCCAGCAGACCACCCTGCACCCGCTTGTGGGCCGCGTTTTTGTACACACGCTGGACCGTGAAAACTTCCTGCACCTTCCTGAGCTCGTCGTCGCTGTCCCAGCCACCGTCCCTATCACCTACCACGCCCACCTCCAGGGACACCCAGACCTGCCCAGGTGGCTCCGCTATGCCCAGCGCAGCCCCCACCAGCCTGGCTTTCTCTATGGCACCGCCACCCCAGCAGATCGCGGACGCCAGGTCATCGAGGTACCAGTAGGGGCCCCAGTGGGCTGTGTTGCATGCAACAGGGACCTGGTGTTCACTCATTTACATGACTCACATGCCTCTAATTTGGTGCGCTATCTCAGTCTTCTCCCACTAGGCCCAGCCGCACCACGGTTCTCTCCTAACCCCACCCTCTCAGCCCTCTACCCCATCCTCCAGGTCACAGCCTACAATCGGGACAGCTTTGACACCACCCGGCAGAGGCTGGTGCTGTTGATTGGAGACGCAGAAGGCCCCCTGCTACCATACCAGGCTGAGTTCCTGGTGCGCAGCCATGATGTAGAGGAGGTGCTGCCCTCGACACCTGCCGGCCGTTTCCTCACAGCCTTGGGGGGGCTCTGGGAGCCAGGGGAACTCCAGCTGCTCAACATCACCTCTGCCTTGGACCGTGGGGGCCGAGTCCCCCTTCCTATCGAGGGCCGCAAGGAAGGGGTATACATCAAGGTGGGCTCTGCCTCACCCTTCTCCACCTGCCTGAAGATGGTGGCATCCCCYRACAGCCAAGCTCGCTGTGCCCAGGGCCAGCCCCCACTGCTGTCCTGCTATGACACCTTGGCACCTCACTTCCGAGTTGACTGGTGCAATGTGTCGTTGGTGGACAAGTCAGTGCCAGAGCCTGCAGACGAGGTACCCACTCCGGGTGATGGGATCCTGGAGCACGACCCGTTCTTCTGCCCACCCACCGAGGCCACAGCCCGAGAATTCCTGACTGACGCACTGGTCACCCTCCTGGTGCCCCTGCTGGTGGCCCTACTGCTCACTCTGCTGCTGGCCTATGTTATGTGCTGCCGGCGGGAGGGACGTTTGAAGAGAGACCTGGCAACCTCTGACATCCAGATGGTCCACCATTGCACCATCCGCGGGAATACAGAGGAGCTGCGACAGATGGCAGCTAGCCGAGAGGTGCCCCGGCCACTCTCTACCCTGCCCATGTTCAATGTGCGCACAGGCGAGCGGCTGCCCCCGCAAGTGGACAGCGCCCGGGTGCCCCTCATCCTGGACCAGCACTGA

Related Sequences

bmy_06724T0 Protein

Length: 448 aa      View alignments
>bmy_06724T0
MAAVLIWISLLVGLLAGLEGTEAQQTTLHPLVGRVFVHTLDRENFLHLPELVVAVPATVPITYHAHLQGHPDLPRWLRYAQRSPHQPGFLYGTATPADRGRQVIEVPVGAPVGCVACNRDLVFTHLHDSHASNLVRYLSLLPLGPAAPRFSPNPTLSALYPILQVTAYNRDSFDTTRQRLVLLIGDAEGPLLPYQAEFLVRSHDVEEVLPSTPAGRFLTALGGLWEPGELQLLNITSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPBSQARCAQGQPPLLSCYDTLAPHFRVDWCNVSLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEATAREFLTDALVTLLVPLLVALLLTLLLAYVMCCRREGRLKRDLATSDIQMVHHCTIRGNTEELRQMAASREVPRPLSTLPMFNVRTGERLPPQVDSARVPLILDQH*