Part of scaffold_263 (Scaffold)

For more information consult the page for scaffold_263 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL10A1 ENSTTRG00000015221 (Bottlenosed dolphin)

Gene Details

collagen, type X, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014422, Bottlenosed dolphin)

Protein Percentage 95.93%
cDNA percentage 97.67%
Ka/Ks Ratio 0.7917 (Ka = 0.0223, Ks = 0.0282)

COL10A1 ENSBTAG00000003078 (Cow)

Gene Details

collagen alpha-1(X) chain precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004006, Cow)

Protein Percentage 86.94%
cDNA percentage 88.53%
Ka/Ks Ratio 0.40098 (Ka = 0.0887, Ks = 0.2212)

COL10A1  (Minke Whale)

Gene Details

collagen, type X, alpha 1

External Links

Gene match (Identifier: BACU020306, Minke Whale)

Protein Percentage 97.98%
cDNA percentage 98.54%
Ka/Ks Ratio 0.61271 (Ka = 0.0123, Ks = 0.0201)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2223 bp    Location:863500..885977   Strand:+
>bmy_06856
ATGCAACCTCTACTACTTTTTCCTAAGAATTTTCCAGCCCCTCTCCTGACCTATCCACTTAACTCTACACCTCCAACCATGGCTACCTTGAGAAACACTGTCTTTAGAAAATCTTACTCTGAAATTCTAACTCGATTACCAATAGGACACTGGAAGAATCCATCTGAGAACATGCTGCCACAAATAGCCCTTCTGCTGCTAATATCCTTGAACTTGGTCCATGGAGTATTTTATACTGAGCGATACCAAACACCTACAGGCATAAAAGGCCCACCATCCAACACCAAGACACAGTTCTTCATCCCTTATGCCGTAAAGAGTAAAGGTATATCAGTAAGAGGAGAGCAAGGTATTCCTGGTCCACCAGGCCCTGCTGGACCTCGAGGGCACCCAGGTCCATCTGGACCACCAGGAAAACCAGGCTATGGAAGTCCTGGACCCCAAGGAGAGCCAGGGTTGCCAGGACCGCCGGGACCATCAGCCACTGGGAAGCCAGGTTTGCCAGGACTCCCAGGAAAACCAGGGGAGAGAGGACCATACGGACCAAAAGGAGATACTGGACCAGCTGGTTTACCAGGACTACGGGGCCAGCCAGGGCCACCTGGAATCCCCGGCCCAGCTGGAATTTCTGTTTCAGGAAAACCTGGGCCACAGGGACCTCCAGGAGCCCCGGGACCCAGGGGCTTTCCTGGAGAAAAGGGTGCACCAGGAGTCCCTGGTATGAATGGACAGAAAGGGGAAACGGGATATGGTGCTCCTGGCCGCCCTGGTGGCAGGGGCCTCCCAGGTCCTCAGGGTCCCATGGGACCACCTGGCCCTCCTGGAGCGGGAAAAAGCGGTGAAAATGGGTTTCCAGGACAGCCAGGTATCAAAGGTGATCGGGGCTTTCCAGGTGAAAGGGGGCCAACTGGCCCACCAGGCCCCCAAGGTCCTCCTGGGGAACAAGGACCAGAAGGCACTGGAAAGCCAGGAGCCCCTGGAGCCCCAGGCCAGCCAGGGGTTCCAGGGACAAAAGGTCACCCTGGGGCTCCAGGAATAGCTGGGCCCCCAGGGGCTCCTGGCTTTGGGAAACCAGGCTTGCCAGGCCTGAAAGGACAAAGAGGACCTGTAGGCCTTCCGGGGGGTCTGGGTGCCAAAGGGGAACAAGGCCCAGCAGGTCATCCCGGGGAACCAGGTCTGACTGGACCCCCTGGGAATATGGGACCCCAAGGACCAAAAGGCATTCCAGGCAACCACGGGATCCCAGGCCCTAAAGGTGAGATGGGGCCAGTCGGGCCTGCAGGATACCCTGGGGCTAAGGGAGAAAGGGGCTCCTCTGGGTTAGATGGAAAACCAGGGTACCCAGGAGAACCGGGTCTCAGTGGTCCTAAGGGTAACCCAGGGTTGCCGGGCCCAAAAGGTGACCCTGGAATTAGAGGACCTCCTGGCCTCCCAGGCCCTGCGGGCCCAGCAGGAGCTAAGGGAGTGCCTGGGCACAATGGTGAGGCTGGGCCAAGAGGTGCCCCTGGAATGCCAGGTACTAGAGGTCCCATCGGGCCACCAGGCATTCCAGGATTCCCTGGATCCAAAGGGGATCCAGGAACTCCAGGTCCTCCTGGTCCAGCTGGCATAGCAACTAAAGGTCTCAATGGACCCACTGGGCCACCAGGTCCAAGAGGGCACGCTGGAGAGCCTGGCCTCCCAGGGCGCCCGGGGCCCCCAGGCCCCCCAGGCCCCCCAGGCCAAGCAGTCCTGCCCGAGGGCTTTGTGAAGGCAGGCCAGAGGCCTTTTATTAGTGCCAACCAGGGAGTAACAGGAATGCCTGTGTCTGCTTTCACTGTTATTCTCTCCAAAGCTTACCCAACTATAAGTACTCCTATCCCATTTGATAAAATTTTATATAACAGGCAACAGCATTATGACCCAAGAACTGGAATCTTTACCTGTAGGATTCCAGGAATATATTACTTCTCCTACCACATGCATGTGAAAGGGACCCATGCTTGGGTGGGCCTGTATAAGAACGGCACCCCTGTAATGTACACCTATGATGAGTACATCAAAGGCTACCTAGATCAGGCTTCAGGGAGCGCCATAATCGATCTCACAGAAAATGACCAGGTGTGGCTCCAGCTGCCCAATGCAGGGTCGAATGGGCTATACTCCTCTGAAGCATTAGCATATGTACCTTGGGCCTTCGATTCCAGTGAAATTATAACTGATGTGAAGGATTTCAAAATGTGA

Related Sequences

bmy_06856T0 Protein

Length: 741 aa      View alignments
>bmy_06856T0
MQPLLLFPKNFPAPLLTYPLNSTPPTMATLRNTVFRKSYSEILTRLPIGHWKNPSENMLPQIALLLLISLNLVHGVFYTERYQTPTGIKGPPSNTKTQFFIPYAVKSKGISVRGEQGIPGPPGPAGPRGHPGPSGPPGKPGYGSPGPQGEPGLPGPPGPSATGKPGLPGLPGKPGERGPYGPKGDTGPAGLPGLRGQPGPPGIPGPAGISVSGKPGPQGPPGAPGPRGFPGEKGAPGVPGMNGQKGETGYGAPGRPGGRGLPGPQGPMGPPGPPGAGKSGENGFPGQPGIKGDRGFPGERGPTGPPGPQGPPGEQGPEGTGKPGAPGAPGQPGVPGTKGHPGAPGIAGPPGAPGFGKPGLPGLKGQRGPVGLPGGLGAKGEQGPAGHPGEPGLTGPPGNMGPQGPKGIPGNHGIPGPKGEMGPVGPAGYPGAKGERGSSGLDGKPGYPGEPGLSGPKGNPGLPGPKGDPGIRGPPGLPGPAGPAGAKGVPGHNGEAGPRGAPGMPGTRGPIGPPGIPGFPGSKGDPGTPGPPGPAGIATKGLNGPTGPPGPRGHAGEPGLPGRPGPPGPPGPPGQAVLPEGFVKAGQRPFISANQGVTGMPVSAFTVILSKAYPTISTPIPFDKILYNRQQHYDPRTGIFTCRIPGIYYFSYHMHVKGTHAWVGLYKNGTPVMYTYDEYIKGYLDQASGSAIIDLTENDQVWLQLPNAGSNGLYSSEALAYVPWAFDSSEIITDVKDFKM*